Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGGAGCCAGAAGGAAAATTTTACTTCTCTGCAACTGCTGGTGCAGAGAAAATTCCTTATGAGGTTGACATTGATCTGTTTGACAAGATTGATGTAAATgtaagagcagtgagctgatggtttgtgaatcgtatctttttcatttatcttttgtaattggtgtgctattatgtctcttctcag

Basic information

species Glycine max
transcript GLYMA16G27570.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G27570.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv18s0001g01940.t01 (Vitis vinifera), 5'ss of exon 3
ACTGGAGCCAGAAGGAAAATTTTACTTCTCTGCAACTGCTGGTGCAGAGAAAATTCCTTATGAGGTTGACATTGATCTGTTTGACAAGATTGATGTAAATgtaagagcagtgagc----tgatggtttg-----tgaatcgtatcttttt-catttatcttttgtaattggtgtgctattatgtctcttctcag
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ATTAGAGCCTGAGGGGAAATTCTTCTTCTCTGCCACCAGTGGAGCTGATAAGATACCTTATGAAATTGACATTGATCTGTTTGACAAAGTTGATGTAAATgtaggttcccgaaccataataatggttttctcccttagtcacatctatttataattatcggaatcatgaggcttattgatatga-tgtctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209703751|gb|BW665024.1|BW665024
EST:     AAATTCCTTATGAGGTTGACATTGATCTGTTTGACAAGATTGATGTAAAT                         AATAGCAAAGCTAGTGTTGGTTCAAGAAACATCTGCTACTTGGTGAAAAAG
genomic: AAATTCCTTATGAGGTTGACATTGATCTGTTTGACAAGATTGATGTAAATgtaagagcag ... ctcttctcagAATAGCAAAGCTAGTGTTGGTTCAAGAAACATCTGCTACTTGGTGAAAAAG
EST: gi|213614007|gb|DB960972.1|DB960972
EST:     AAATTCCTTATGAGGTTGACATTGATCTGTTTGACAAGATTGATGTAAAT                         AATAGCAAAGCTAGTGTTGGTTCAAGAAACATCTGCTACTTGGTGAAAAAG
genomic: AAATTCCTTATGAGGTTGACATTGATCTGTTTGACAAGATTGATGTAAATgtaagagcag ... ctcttctcagAATAGCAAAGCTAGTGTTGGTTCAAGAAACATCTGCTACTTGGTGAAAAAG
EST: gi|298188987|gb|HO035712.1|HO035712
EST:     AAATTCCTTATGAGGTTGACATTGATCTGTTTGACAAGATTGATGTAAAT                         AATAGCAAAGCTAGTGTTGGCTCAAGAAACATCTGCTACTTGGTGAAAAAG
genomic: AAATTCCTTATGAGGTTGACATTGATCTGTTTGACAAGATTGATGTAAATgtaagagcag ... ctcttctcagAATAGCAAAGCTAGTGTTGGTTCAAGAAACATCTGCTACTTGGTGAAAAAG
EST: gi|213587097|gb|DB965885.1|DB965885
EST:     AAATTCCTTATGAGGTTGACATTGATCTGTTTGACAAGATTGATGTAAAT                         AATAGCAAAGCTAGTGTTGGTTCAAGAAACATCTGCTACTTGGTGAAAAAG
genomic: AAATTCCTTATGAGGTTGACATTGATCTGTTTGACAAGATTGATGTAAATgtaagagcag ... ctcttctcagAATAGCAAAGCTAGTGTTGGTTCAAGAAACATCTGCTACTTGGTGAAAAAG
EST: gi|192323243|gb|FK017409.1|FK017409
EST:     AAATTCCTTATGAGGTTGACATTGATCTGTTTGACAAGATTGATGTAAAT                         AATAGCAAAGCTAGTGTTGGTTCAAGAAACATCTGCTACTTGGTGAAAAAG
genomic: AAATTCCTTATGAGGTTGACATTGATCTGTTTGACAAGATTGATGTAAATgtaagagcag ... ctcttctcagAATAGCAAAGCTAGTGTTGGTTCAAGAAACATCTGCTACTTGGTGAAAAAG
EST: gi|192297482|gb|FG989517.1|FG989517
EST:     AAATTCCTTATGAGGTTGACATTGATCTGTTTGACAAGATTGATGTAAAT                         AATAGCAAAGCTAGTGTTGGTTCAAGAAACATCTGCTACTTGGTGAAAAAG
genomic: AAATTCCTTATGAGGTTGACATTGATCTGTTTGACAAGATTGATGTAAATgtaagagcag ... ctcttctcagAATAGCAAAGCTAGTGTTGGTTCAAGAAACATCTGCTACTTGGTGAAAAAG
EST: gi|192327386|gb|FK018148.1|FK018148
EST:     AAATTCCTTATGAGGTTGACATTGATCTGTTTGACAAGATTGATGTAAAT                         AATAGCAAAGCTAGTGTTGGTTCAAGAAACATCTGCTACTTGGTGAAAAAG
genomic: AAATTCCTTATGAGGTTGACATTGATCTGTTTGACAAGATTGATGTAAATgtaagagcag ... ctcttctcagAATAGCAAAGCTAGTGTTGGTTCAAGAAACATCTGCTACTTGGTGAAAAAG