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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTACTTTCAGTGTTCCATTTGCTCTAGCATCAATATACTGCAGCGCTTCAGGAGCAGGCCAAGgtaaacacaccaattcacaacttgtcagaattagattattttaattacaatttatttatacttaaattcataaaagtaactttaaatattttacttttcg...

Basic information

species Glycine max
transcript GLYMA16G27350.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120534391|gb|EH262524.1|EH262524
EST:     TCCATTTGCTCTAGCATCAATATACTGCAGCGCTTCAGGAGCAGGCCAAG                         GTTTATCTTTGGGAGTCCTCAATCTTGCAATTGTGGTGCCACAG
genomic: TCCATTTGCTCTAGCATCAATATACTGCAGCGCTTCAGGAGCAGGCCAAGgtaaacacac ... tttgcttcagGTTTATCTTTGGGAGTCCTCAATCTTGCAATTGTGGTGCCACAG
EST: gi|58014493|gb|CX701235.1|CX701235
EST:     TCCATTTGCTCTAGCATCAATATACTGCAGCGCTTCAGGAGCAGGCCAAG                         GTTTATCTTTGGGAGTCCTCAATCTTGCAATTGTGGTGCCACAG
genomic: TCCATTTGCTCTAGCATCAATATACTGCAGCGCTTCAGGAGCAGGCCAAGgtaaacacac ... tttgcttcagGTTTATCTTTGGGAGTCCTCAATCTTGCAATTGTGGTGCCACAG
EST: gi|8402267|gb|BE057901.1|BE057901
EST:     TCCATTTGCTCTAGCATCAATATACTGCAGCGCTTCAGGAGCAGGCCAAG                         GTTTATCTTTGGGAGTCCTCAATCTTGCAATTGTGGTGCCACAG
genomic: TCCATTTGCTCTAGCATCAATATACTGCAGCGCTTCAGGAGCAGGCCAAGgtaaacacac ... tttgcttcagGTTTATCTTTGGGAGTCCTCAATCTTGCAATTGTGGTGCCACAG
EST: gi|31465260|gb|CD407288.1|CD407288
EST:     TCCATTTGCTCTAGCATCAATATACTGCAGCGCTTCAGGAGCAGGCCAAG                         GTTTATCTTTGGGAGTCCTCAATCTTGCAATTGTGGTGCCACAG
genomic: TCCATTTGCTCTAGCATCAATATACTGCAGCGCTTCAGGAGCAGGCCAAGgtaaacacac ... tttgcttcagGTTTATCTTTGGGAGTCCTCAATCTTGCAATTGTGGTGCCACAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTACTTTCAGTGTTCCATTTGCTCTAGCATCAATATACTGCAGCGCTTCAGGAGCAGGCCAAGgtaaacacaccaattcacaacttgtcagaattagattattttaattacaatttatttatacttaaattcataaaagtaactttaaatattttacttttcg

- - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagtaa