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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTGGATTGGGTGCTGAGATCATTGGAACCTTTGTTTTGGTCTACACTGTGTTCTCTGCAACTGACCCCAAGAGGAATGCTAGAGATTCTCATGTGCCGgtatgaactcaatcatttttattgccttctttgaaaatacattgttttaatttaaccacatggcatgagtttcttattgtgcttttgttttgtacttgaag

Basic information

species Glycine max
transcript GLYMA16G27140.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4295198|gb|AI442299.1|AI442299
EST:     TGTTCTCTGCAACTGATCCCAAGAGGAATGCTAGAGATTCTCATGTGCCG                         GTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCA
genomic: TGTTCTCTGCAACTGACCCCAAGAGGAATGCTAGAGATTCTCATGTGCCGgtatgaactc ... gtacttgaagGTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCA
EST: gi|21677365|gb|BQ629716.1|BQ629716
EST:     TGTTCTCTGCAACTGATCCCAAGAGGAATGCTAGAGATTCTCATGTGCCG                         GTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCA
genomic: TGTTCTCTGCAACTGACCCCAAGAGGAATGCTAGAGATTCTCATGTGCCGgtatgaactc ... gtacttgaagGTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCA
EST: gi|10848346|gb|BF070849.1|BF070849
EST:     TGTTCTCTGCAACTGATCCCAAGAGGAATGCTAGAGATTCTCATGTGCCG                         GTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCA
genomic: TGTTCTCTGCAACTGACCCCAAGAGGAATGCTAGAGATTCTCATGTGCCGgtatgaactc ... gtacttgaagGTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCA
EST: gi|208118597|gb|GD918322.1|GD918322
EST:     TGTTCTCTGCAACTGATCCCAAGAGGAATGCTAGAGATTCTCATGTGCCG                         GTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCA
genomic: TGTTCTCTGCAACTGACCCCAAGAGGAATGCTAGAGATTCTCATGTGCCGgtatgaactc ... gtacttgaagGTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCA
EST: gi|10237489|gb|BE806377.1|BE806377
EST:     GTTCTCTGCAACTGATCCCCAA-AGGAATGCTACAGATTCTTATGTGCCG                         GTTTTGGCTCCACTTTCAATTGGCTTTGCT
genomic: GTTCTCTGCAACTGA-CCCCAAGAGGAATGCTAGAGATTCTCATGTGCCGgtatgaactc ... gtacttgaagGTTTTGGCTCCACTTCCAATTGGCTTTGCT
EST: gi|208154696|gb|GD958087.1|GD958087
EST:     TCTCTGCTAACTTGATCCCAAGAGGAATGCTAGAGATTCTCATGTGCCG                         GTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCA
genomic: TCTCTGC-AAC-TGACCCCAAGAGGAATGCTAGAGATTCTCATGTGCCGgtatgaactc ... gtacttgaagGTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCA
EST: gi|193353871|gb|FK321627.1|FK321627
EST:     TGCAACTGATTCCCAAGAGGAATGCTAGAGATTCTCATGTGCCG                         GTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCA
genomic: TGCAACTGA-CCCCAAGAGGAATGCTAGAGATTCTCATGTGCCGgtatgaactc ... gtacttgaagGTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCA
EST: gi|13789683|gb|BG652274.1|BG652274
EST:     TGTTCTCTGCAACTGATCCCAAGAGGAATGCTAGAGATTCTCATGTGCCG                         GTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCA
genomic: TGTTCTCTGCAACTGACCCCAAGAGGAATGCTAGAGATTCTCATGTGCCGgtatgaactc ... gtacttgaagGTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCA
EST: gi|208120704|gb|GD917489.1|GD917489
EST:     TGTTCTCTGCAACTGATCCCAAGAGGAATGCTAGAGATTCTCATGTGCCG                         GTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCA
genomic: TGTTCTCTGCAACTGACCCCAAGAGGAATGCTAGAGATTCTCATGTGCCGgtatgaactc ... gtacttgaagGTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCA
EST: gi|209729770|gb|BW658575.1|BW658575
EST:     TGTTCTCTGCAACTGACCCCAAGAGGAATGCTAGAGATTCTCATGTGCCG                         GTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCA
genomic: TGTTCTCTGCAACTGACCCCAAGAGGAATGCTAGAGATTCTCATGTGCCGgtatgaactc ... gtacttgaagGTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCA
EST: gi|208053598|gb|GD852671.1|GD852671
EST:     TGTTCTCTGCAACTGATCCCAAGAGGAATGCTAGAGATTCTCATGTGCCG                         GTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCACGGTTCACTTGGCA
genomic: TGTTCTCTGCAACTGACCCCAAGAGGAATGCTAGAGATTCTCATGTGCCGgtatgaactc ... gtacttgaagGTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCA
EST: gi|193317998|gb|FK283322.1|FK283322
EST:     TGTTCTCTGCAACTGATCCCAAGAGGAATGCTAGAGATTCTCATGTGCCG                         GTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCA
genomic: TGTTCTCTGCAACTGACCCCAAGAGGAATGCTAGAGATTCTCATGTGCCGgtatgaactc ... gtacttgaagGTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTTGGATTGGGTGCTGAGATCATTGGAACCTTTGTTTTGGTCTACACTGTGTTCTCTGCAACTGACCCCAAGAGGAATGCTAGAGATTCTCATGTGCCGgtatgaactcaatcatttttattgccttctttgaaaatacattgttttaatttaaccacatggcatgagtttcttattgtgcttttgttttgtacttgaag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA