1 5' 3' | 2 5' 3' | 3 5' 3' |
TGTTGGATTGGGTGCTGAGATCATTGGAACCTTTGTTTTGGTTTACACTGTGTTCTCTGCAACTGATCCCAAGAGGAATGCTAGAGATTCTCATGTGCCGgtatgaactcaatcatttttattgccttctttgaaaagacattgttacattaactcagaggaaaatgttgcttgcataagttgtgttgaaagcaatgatt...
species | Glycine max |
transcript | GLYMA16G27130.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGTTCTCTGCAACTGATCCCAAGAGGAATGCTAGAGATTCTCATGTGCCG GTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCAEST: gi|6724622|gb|AW309077.1|AW309077
genomic: TGTTCTCTGCAACTGATCCCAAGAGGAATGCTAGAGATTCTCATGTGCCGgtatgaactc ... gtacttgaagGTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCA
EST: TGTTCTCTGCAACTGATCCCAAGAGGAATGCTAGAGATTCTCATGTGCCG GTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCAEST: gi|58022167|gb|CX708908.1|CX708908
genomic: TGTTCTCTGCAACTGATCCCAAGAGGAATGCTAGAGATTCTCATGTGCCGgtatgaactc ... gtacttgaagGTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCA
EST: TGTTCTCTGCAACTGATCCCAAGAGGAATGCTAGAGATTCTCATGTGCCG GTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCAEST: gi|17519398|gb|BM188440.1|BM188440
genomic: TGTTCTCTGCAACTGATCCCAAGAGGAATGCTAGAGATTCTCATGTGCCGgtatgaactc ... gtacttgaagGTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCA
EST: TGTTCTCTGCAACTGATCCCAAGAGGAATGCTAGAGATTCTCATGTGCCG GTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCAEST: gi|151410016|gb|EV279824.1|EV279824
genomic: TGTTCTCTGCAACTGATCCCAAGAGGAATGCTAGAGATTCTCATGTGCCGgtatgaactc ... gtacttgaagGTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCA
EST: TGTTCTCTGCAACTGATCCCAAGAGGAATGCTAGAGATTCTCATGTGCCG GTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCGCTTGGCAEST: gi|208075052|gb|GD876333.1|GD876333
genomic: TGTTCTCTGCAACTGATCCCAAGAGGAATGCTAGAGATTCTCATGTGCCGgtatgaactc ... gtacttgaagGTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCA
EST: GAGGAATGCTAGTAGATTCTCATGTGCCG GTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCAEST: gi|207779715|gb|GD752547.1|GD752547
genomic: GAGGAATGCTAG-AGATTCTCATGTGCCGgtatgaactc ... gtacttgaagGTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCA
EST: GAGGAATGCTAGTAGATTCTCATGTGCCG GTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCAEST: gi|7326946|gb|AW620744.1|AW620744
genomic: GAGGAATGCTAG-AGATTCTCATGTGCCGgtatgaactc ... gtacttgaagGTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCA
EST: TGTTCTCTGCAACTGATCCCAAGAGGAATGCTAGAGATTCTCATGTGCCG GTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCAEST: gi|12496060|gb|BG046874.1|BG046874
genomic: TGTTCTCTGCAACTGATCCCAAGAGGAATGCTAGAGATTCTCATGTGCCGgtatgaactc ... gtacttgaagGTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCA
EST: GTTCTCTGCAACTGATCCCAAGAGGAATGCTAGAGATTCTCATGTGCCG GTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCAEST: gi|58022426|gb|CX709167.1|CX709167
genomic: GTTCTCTGCAACTGATCCCAAGAGGAATGCTAGAGATTCTCATGTGCCGgtatgaactc ... gtacttgaagGTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCA
EST: TGTTCTCTGCAACTGATCCCAAGAGGAATGCTAGAGATTCTCATGTGCCG GTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCAEST: gi|6846997|gb|AW349287.1|AW349287
genomic: TGTTCTCTGCAACTGATCCCAAGAGGAATGCTAGAGATTCTCATGTGCCGgtatgaactc ... gtacttgaagGTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCA
EST: TGTTCTCTGCAACTGATCCCAAGAGGAATGCTAGAGATTCTCATGTGCCG GTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCA
genomic: TGTTCTCTGCAACTGATCCCAAGAGGAATGCTAGAGATTCTCATGTGCCGgtatgaactc ... gtacttgaagGTTTTGGCTCCACTTCCAATTGGCTTTGCTGTGTTCATGGTTCACTTGGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTGGATTGGGTGCTGAGATCATTGGAACCTTTGTTTTGGTTTACACTGTGTTCTCTGCAACTGATCCCAAGAGGAATGCTAGAGATTCTCATGTGCCGgtatgaactcaatcatttttattgccttctttgaaaagacattgttacattaactcagaggaaaatgttgcttgcataagttgtgttgaaagcaatgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagaca