1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ACCACCCATGTGACAGGGAGAGTGACAGGGTTGTCCCAAGGCTTTCATGGGTTCCATATTCATGCTTTTGGTGACACCACCAATGGCTGCAACTCCACTGgttctctcttctcttctcttcatgaatgattatcatcatcaaacttttacaatttcctcttacacctatcttttgtaggaaaatgaaaaagggagggttt...
species | Glycine max |
transcript | GLYMA16G27020.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCCATATTCATG-TTCTCNGTTGACACCACCAATGGCTGCAACTCCACTG GTCCTCACTTCAATCCGTTCAAGAAGGATCATGGGGCTCCTTCAGATGATAEST: gi|31470014|gb|CD412042.1|CD412042
genomic: TCCATATTCATGCTT-T-TGGTGACACCACCAATGGCTGCAACTCCACTGgttctctctt ... tctaccccagGTCCTCACTTCAATCCGTTCAAGAAGGATCATGGGGCTCCTTCAGATGATA
EST: GTTCCATATTCATGCTTTTGGTGACACCACCAATGGCTGCAACTCCACTG GTCCTCACTTCAATCCGTTCAAGAAGGATCATGGGGCTCCTTCAGATGATAEST: gi|31470725|gb|CD412753.1|CD412753
genomic: GTTCCATATTCATGCTTTTGGTGACACCACCAATGGCTGCAACTCCACTGgttctctctt ... tctaccccagGTCCTCACTTCAATCCGTTCAAGAAGGATCATGGGGCTCCTTCAGATGATA
EST: GTTCCATATTCATGCTTTTGGTGACACCACCAATGGCTGCAACTCCACTG GTCCTCACTTCAATCCGTTCAAGAAGGATCATGGGGCTCCTTCAGATGATAEST: gi|7146773|gb|AW508695.1|AW508695
genomic: GTTCCATATTCATGCTTTTGGTGACACCACCAATGGCTGCAACTCCACTGgttctctctt ... tctaccccagGTCCTCACTTCAATCCGTTCAAGAAGGATCATGGGGCTCCTTCAGATGATA
EST: GTTCCATATTCATGCTTTTGGTGACACCACCAATGGCTGCAACTCCACTG GTCCTCACTTCAATCCGTTCAAGAAGGATCATGGGGCTCCTTCAGATGATAEST: gi|209702151|gb|BW677951.1|BW677951
genomic: GTTCCATATTCATGCTTTTGGTGACACCACCAATGGCTGCAACTCCACTGgttctctctt ... tctaccccagGTCCTCACTTCAATCCGTTCAAGAAGGATCATGGGGCTCCTTCAGATGATA
EST: GTTCCATATTCATGCTTTTGGTGACACCACCAATGGCTGCAACTCCACTG GTCCTCACTTCAATCCGTTCAAGAAGGATCATGGGGCTCCTTCAGATGATAEST: gi|192334422|gb|FK024115.1|FK024115
genomic: GTTCCATATTCATGCTTTTGGTGACACCACCAATGGCTGCAACTCCACTGgttctctctt ... tctaccccagGTCCTCACTTCAATCCGTTCAAGAAGGATCATGGGGCTCCTTCAGATGATA
EST: GTTCCATATTCATGCTTTTGGTGACACCACCAATGGCTGCAACTCCACTG GTCCTCACTTCAATCCGTTCAAGAAGGATCATGGGGCTCCTTCAGATGATAEST: gi|6747004|gb|AW317460.1|AW317460
genomic: GTTCCATATTCATGCTTTTGGTGACACCACCAATGGCTGCAACTCCACTGgttctctctt ... tctaccccagGTCCTCACTTCAATCCGTTCAAGAAGGATCATGGGGCTCCTTCAGATGATA
EST: GTTCCATATTCATGCTTTTGGTGACACCACCAATGGCTGCAACTCCACTG GTCCTCACTTCAATCCGTTCAAGAAGGATCATGGGGCTCCTTCAGATGATAEST: gi|31472202|gb|CD414230.1|CD414230
genomic: GTTCCATATTCATGCTTTTGGTGACACCACCAATGGCTGCAACTCCACTGgttctctctt ... tctaccccagGTCCTCACTTCAATCCGTTCAAGAAGGATCATGGGGCTCCTTCAGATGATA
EST: GTTCCATATTCATGCTTTTGGTGACACCACCAATGGCTGCAACTCCACTG GTCCTCACTTCAATCCGTTCAAGAAGGATCATGGGGCTCCTTCAGATGATAEST: gi|209702150|gb|BW677950.1|BW677950
genomic: GTTCCATATTCATGCTTTTGGTGACACCACCAATGGCTGCAACTCCACTGgttctctctt ... tctaccccagGTCCTCACTTCAATCCGTTCAAGAAGGATCATGGGGCTCCTTCAGATGATA
EST: GTTCCATATTCATGCTTTTGGTGACACCACCAATGGCTGCAACTCCACTG GTCCTCACTTCAATCCGTTCAAGAAGGATCATGGGGCTCCTTCAGATGATAEST: gi|298171130|gb|HO016162.1|HO016162
genomic: GTTCCATATTCATGCTTTTGGTGACACCACCAATGGCTGCAACTCCACTGgttctctctt ... tctaccccagGTCCTCACTTCAATCCGTTCAAGAAGGATCATGGGGCTCCTTCAGATGATA
EST: GTTCCATATTCATGCTTTTGGTGACACCACCAATGGCTGCAACTCCACTG GTCCTCACTTCAATCCGCTCAAGAAGGATCATGGGGCTCCTTCAGATGATAEST: gi|10255867|gb|BE823633.1|BE823633
genomic: GTTCCATATTCATGCTTTTGGTGACACCACCAATGGCTGCAACTCCACTGgttctctctt ... tctaccccagGTCCTCACTTCAATCCGTTCAAGAAGGATCATGGGGCTCCTTCAGATGATA
EST: GTTCCATATTCATGCTTTTGGTGACACCACCAATGGCTGCAACTCCACTG GTCCTCACTTCAATCCGTTCAAGAAGGATCATGGGGCTCCTTCAGATGATAEST: gi|298197096|gb|HO041839.1|HO041839
genomic: GTTCCATATTCATGCTTTTGGTGACACCACCAATGGCTGCAACTCCACTGgttctctctt ... tctaccccagGTCCTCACTTCAATCCGTTCAAGAAGGATCATGGGGCTCCTTCAGATGATA
EST: GTTCCATATTCATGCTTTTGGTGACACCACCAATGGCTGCAACTCCACTG GTCCTCACTTCAATCCGTTCAAGAAGGATCATGGGGCTCCTTCAGATGATAEST: gi|15200962|gb|BI424621.1|BI424621
genomic: GTTCCATATTCATGCTTTTGGTGACACCACCAATGGCTGCAACTCCACTGgttctctctt ... tctaccccagGTCCTCACTTCAATCCGTTCAAGAAGGATCATGGGGCTCCTTCAGATGATA
EST: GTTCCATATTCATGCTTTTGGTGACACCACCAATGGCTGCAACTCCACTG GTCCTCACTTCAATCCGTTCAAGAAGGATCATGGGGCTCCTTCAGATGATA
genomic: GTTCCATATTCATGCTTTTGGTGACACCACCAATGGCTGCAACTCCACTGgttctctctt ... tctaccccagGTCCTCACTTCAATCCGTTCAAGAAGGATCATGGGGCTCCTTCAGATGATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCACCCATGTGACAGGGAGAGTGACAGGGTTGTCCCAAGGCTTTCATGGGTTCCATATTCATGCTTTTGGTGACACCACCAATGGCTGCAACTCCACTGgttctctcttctcttctcttcatgaatgattatcatcatcaaacttttacaatttcctcttacacctatcttttgtaggaaaatgaaaaagggagggttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggaggg