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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCACGGTTCCTGTATATTTTCAGGAAGgtataatttcaagcttatgttaatatatatatatatatatatatatatgtatatgtatgtttgataatcgatatcaatttattttttcattatatgtact...

Basic information

species Glycine max
transcript GLYMA16G26800.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193608999|gb|FK561583.1|FK561583
EST:     GTCACGGTTCCTGTATATTTTCAGGGAG                         TGGTGGTAAAAATGTTACCAGCGTAAATGGCACAGCATTGGCTCCATCAAC
genomic: GTCACGGTTCCTGTATATTTTCAGGAAGgtataatttc ... tggtgaacagTGGTGGTAAAAATGTTACCAGCGTAAATGGCACAGCATTGGCTCCATCAAC
EST: gi|193546085|gb|FK502290.1|FK502290
EST:     GTCACGGTTCCTGTATATTTTCAGGAAG                         TGGTGGTAAAAATGTTACCAGCGTAAATGGCACAGCATTGGCTCCATC
genomic: GTCACGGTTCCTGTATATTTTCAGGAAGgtataatttc ... tggtgaacagTGGTGGTAAAAATGTTACCAGCGTAAATGGCACAGCATTGGCTCCATC
EST: gi|193687631|gb|FK633476.1|FK633476
EST:     GTCACGGTTCCTGTATATTTTCAGGAAG                         TGGTGGTAAAAATGTTACCAGCGTAAATGGCACAGCATTGGCTCCATCAA
genomic: GTCACGGTTCCTGTATATTTTCAGGAAGgtataatttc ... tggtgaacagTGGTGGTAAAAATGTTACCAGCGTAAATGGCACAGCATTGGCTCCATCAA
EST: gi|193478660|gb|FK444131.1|FK444131
EST:     GTCACGGTTCCTGTATATTTTCAGGAAG                         TGGTGGTAAAAATGTTACCAGCGTAAATGGCACAGCATTGGCTCCATCAAC
genomic: GTCACGGTTCCTGTATATTTTCAGGAAGgtataatttc ... tggtgaacagTGGTGGTAAAAATGTTACCAGCGTAAATGGCACAGCATTGGCTCCATCAAC
EST: gi|193497441|gb|FK458293.1|FK458293
EST:     GTCACGGTTCCTGTATATTTTCAGGAAG                         TGGTGGTAAAAATGTTACCAGCGTAAATGGCACAGCATTGGTTCCATCAAC
genomic: GTCACGGTTCCTGTATATTTTCAGGAAGgtataatttc ... tggtgaacagTGGTGGTAAAAATGTTACCAGCGTAAATGGCACAGCATTGGCTCCATCAAC
EST: gi|193350844|gb|FK318688.1|FK318688
EST:     GTCACGGTTCCTGTATATTTTCAGGAAG                         TGGTGGTAAAAATGTTACCAGCGTAAATGGCACAGCATTGGCTCCATCAAC
genomic: GTCACGGTTCCTGTATATTTTCAGGAAGgtataatttc ... tggtgaacagTGGTGGTAAAAATGTTACCAGCGTAAATGGCACAGCATTGGCTCCATCAAC
EST: gi|193582908|gb|FK542336.1|FK542336
EST:     GTCACGGTTCCTGTATATTTTCAGGGAG                         TGGTGGTAAAAATGTTACCAGCGTAAATGGCACAGCATTGGCTCCATCAAC
genomic: GTCACGGTTCCTGTATATTTTCAGGAAGgtataatttc ... tggtgaacagTGGTGGTAAAAATGTTACCAGCGTAAATGGCACAGCATTGGCTCCATCAAC
EST: gi|193384704|gb|FK351046.1|FK351046
EST:     GTCACGGTTCCTGTATATTTTCAGGAAAG                         TGGTGGTAAAAATGTTACCAGCGTAAATGGCACAGCATTGGCTCCATC
genomic: GTCACGGTTCCTGTATATTTTCAGGAA-Ggtataatttc ... tggtgaacagTGGTGGTAAAAATGTTACCAGCGTAAATGGCACAGCATTGGCTCCATC