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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAAAGCATCGTGCCAATACTATGATAGATCATCTTCTTGCTCAACAGCAATCACAACCTGAATATTACACCGATCAAATCATCAAAGGACTTGCACTGgtaattaattaattattactttgtatgcataatcttcgtttttacaatatttagtgcgtagtacgtgtgtttggaaattggaattatatttttaaataat...

Basic information

species Glycine max
transcript GLYMA16G26520.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6454678|gb|AW185361.1|AW185361
EST:     AATCACAACCTGAATATTACACCGATCAAATCATCAAAGGACTTGCACTG                         GTAATGCTACTTGCAGGAACAGATACATCAGCAGTAACTTTAGAATGGGCA
genomic: AATCACAACCTGAATATTACACCGATCAAATCATCAAAGGACTTGCACTGgtaattaatt ... ttctttacagGTAATGCTACTTGCAGGAACAGATACATCAGCAGTAACTTTAGAATGGGCA
EST: gi|19936638|gb|BQ080953.1|BQ080953
EST:     AATCACAACCTGAATATTACACCGATCAAATCATCAAAGGACTTGCACTG                         GTAATGCTACTTGCAGGAACAGATACATCAGCAGTAACTTTAGAATGGGCA
genomic: AATCACAACCTGAATATTACACCGATCAAATCATCAAAGGACTTGCACTGgtaattaatt ... ttctttacagGTAATGCTACTTGCAGGAACAGATACATCAGCAGTAACTTTAGAATGGGCA
EST: gi|7639367|gb|AW733691.1|AW733691
EST:     AATCACAACCTGAATATTACACCGATCAAATCATCAAAGGACTTGCACTG                         GTAATGCTACTTGCAGGAACAGATACATCAGCAGTAACTTTAGAATGGGCA
genomic: AATCACAACCTGAATATTACACCGATCAAATCATCAAAGGACTTGCACTGgtaattaatt ... ttctttacagGTAATGCTACTTGCAGGAACAGATACATCAGCAGTAACTTTAGAATGGGCA
EST: gi|192295503|gb|FG988077.1|FG988077
EST:     AATCACAACCTGAATATTACACCGAACAAATCATCAAAGGACTTGCACTG                         GTAATGCTACTT
genomic: AATCACAACCTGAATATTACACCGATCAAATCATCAAAGGACTTGCACTGgtaattaatt ... ttctttacagGTAATGCTACTT
EST: gi|254331946|gb|GR843689.1|GR843689
EST:     CATCAAAGGACTTGCACTG                         GTAATGCTACTTGCAGGAACAGATACATCAGCAGTAACTTTAGAATGGGCA
genomic: CATCAAAGGACTTGCACTGgtaattaatt ... ttctttacagGTAATGCTACTTGCAGGAACAGATACATCAGCAGTAACTTTAGAATGGGCA