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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCTTCAAGAGTCAGGGATTTTCCCCCAGAGCAATTCTGTAGACATGGCTTTGTTCTGGGGAAGGCAAGTGAGGCAGGTTTTGGGAATGAAATgtacaaggtcttaactgctgcagcacttagtataatgctaaaccggtccttgatcattggtcaaaccaggcatattggttttttctcaagcctttctaat...

Basic information

species Glycine max
transcript GLYMA16G26160.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G26160.2 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os11g31110.1 (Oryza sativa), 5'ss of exon 2
GTGCTTCAAGAGTCAGGGATTTTCCCCCAGAGCAATTCTGTAGACATGGCTTTGTTCTGGGGAAGGCAAGTGAGGCAGGTTTTGGGAATGAAATgtacaaggtcttaactgctgcagcacttagtataatgctaaaccggtccttgatcattggtcaaaccaggcatattggttttttctcaagcctttctaat---------------------------------------------------------------------
                                                               | ||   ||| || || ||||| ||||||||||||||| | ||||| || |||||| | ||| | ||| ||||||||||  | ||||| || |||||||||||| |   |||  ||||||   ||| |  |                                                                     
---------------------------------------------------------------AAGCCTCTGAAGCTGGGTTTGGTAATGAAATGTACAAGATATTAACAGCAGCAGCATTGAGTGTTATGTTAAACCGGTCTCTCATCATCGGGCAAACCAGgcatgtgcatttactctcaattatttatcttccttatctatcgggtttgaatacgttggacctatattttgactttcctgtgatgattatatatgagata

upper sequence: GLYMA16G26160.2 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G015854_T01 (Zea mays), 5'ss of exon 2
GTGCTTCAAGAGTCAGGGATTTTCCCCCAGAGCAATTCTGTAGACATGGCTTTGTTCTGGGGAAGGCAAGTGAGGCAGGTTTTGGGAATGAAATgtacaaggtcttaactgctgcagcacttagtataatgctaaaccggtccttgatcattggtcaaaccaggcatattggttttttctcaagcctttctaat---------------------------------------------------------------------
                                                               | |||  ||| || || ||||| ||||||||||||||| ||||||| || | |||  | ||| | ||| ||||||| || |||||||| || ||||| |||||||| | |||   |||      || | ||                                                                     
---------------------------------------------------------------AAGCATCTGAAGCTGGATTTGGCAATGAAATGTACAAGATCTTAACAGCGGGAGCCTTGAGTGTCATGTTAAACCGATCTTTGATCATCGGGCAAACAAGgcatatggatttacactctgctacttttcatgtgtatctttgatttgactattatgcgattggtcggaagcattgagttctatgaatttgcttcttttcc

upper sequence: GLYMA16G26160.2 (Glycine max), 5'ss of exon 2
lower sequence: AT3G26950.1 (Arabidopsis thaliana), 5'ss of exon 2
GTGCTTCAAGAGTCAGGGATTTTCCCCCAGAGCAATTCTGTAGACATGGCTTTGTTCTGGGGAAGGCAAGTGAGGCAGGTTTTGGGAATGAAATgtacaaggtcttaactgctgcagcacttagtataatgctaaaccggtccttgatcattggtcaaaccaggcatat--tggttttttctcaagcctttctaat-------------------------------------------------------------------------------------
                                                               |  ||   || || || ||||| || |||||||| ||| |||||||  | |||||| | || |||||| ||||| | |||||||||||||| || |||||||||||  ||||| |||||||| ||||| |                                                                                        
---------------------------------------------------------------AAACAGCAGAAGCTGGATTTGGAAACGAAATGTATAAGATCTTAACATCAGCAGCATTGAGCATAATGTTAAACAGATCCTTGATCATTGGCCAGACCAGgcatatattggttctttctcaatcctttttctctatattaactgaactgttactatgcttgttgtagtttgtgttatttgtcttgtttatatttctttctttctctgggtatcctcag

upper sequence: GLYMA16G26160.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv14s0068g01550.t01 (Vitis vinifera), 5'ss of exon 2
GTGCTTCAAGAGTCAGGGATTTTCCCCCAGAGCAATTCTGTAGACATGGCTTTGTTCTGGGGAAGGCAAGTGAGGCAGGTTTTGGGAATGAAATgtacaaggtcttaactgctgcagcacttagtataatgctaaaccggtccttgatcattggtcaaaccaggcatattggttttttctcaagcctttctaat---------------------------------------------------------------------
                                                               |||||   || ||||| ||||| ||||||||||||||| |||| |||||||||||| | ||||| ||| | ||||||||| ||||||| || ||||||||||||||||||| |||||| |||||||||  |                                                                     
---------------------------------------------------------------AGGCATCAGAAGCAGGATTTGGCAATGAAATGTACAAGATCTTGACTGCTGCAGCATTGAGTATCATGTTGAACCGGTCCCTGATCATCGGGCAAACCAGgcatattggttctttctccagcctttctgttttatattcaaaattggcttttctctataatgaatttagttataaacaaatgctagttttgtgtagcctt