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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCAAGTGAGGCAGGTTTTGGGAATGAAATGTACAAGGTCTTAACTGCTGCAGCACTTAGTATAATGCTAAACCGGTCCTTGATCATTGGTCAAACCAGgcatattggttttttctcaagcctttctaatttttcttttcacttttaagaacttttacattctctcaactgaaatttagagaatccatgttcattggct...

Basic information

species Glycine max
transcript GLYMA16G26160.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G26160.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os11g31110.1 (Oryza sativa), 5'ss of exon 2
AGGCAAGTGAGGCAGGTTTTGGGAATGAAATGTACAAGGTCTTAACTGCTGCAGCACTTAGTATAATGCTAAACCGGTCCTTGATCATTGGTCAAACCAGgcatattggttttttctcaagccttt--ctaatttttcttttcacttttaagaacttttacat-tctctcaactgaaatttagagaatccatgttcattggct
| ||   ||| || || ||||| ||||||||||||||| | ||||| || |||||| | ||| | ||| ||||||||||  | ||||| || |||||||||||| |   |||  ||||||   |||  ||   || ||| |    ||| || |  ||  || | | | |  |||    | |   || |  || |    |    
AAGCCTCTGAAGCTGGGTTTGGTAATGAAATGTACAAGATATTAACAGCAGCAGCATTGAGTGTTATGTTAAACCGGTCTCTCATCATCGGGCAAACCAGgcatgtgcatttactctcaattatttatcttccttatctatcgggtttgaatacgttggacctatattttgactttcctgtgatgattatatatgagata---

upper sequence: GLYMA16G26160.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G015854_T01 (Zea mays), 5'ss of exon 2
AGGCAAGTGAGGCAGGTTTTGGGAATGAAATGTACAAGGTCTTAACTGCTGCAGCACTTAGTATAATGCTAAACCGGTCCTTGATCATTGGTCAAACCAGgcatattggttttttctcaagcctttctaatttttcttttcacttttaagaacttttacattctctcaa--ctgaaatttagagaatccatgttcattggct
| |||  ||| || || ||||| ||||||||||||||| ||||||| || | |||  | ||| | ||| ||||||| || |||||||| || ||||| |||||||| | |||   |||      || | || | | | ||   ||| |  |   |     |  ||  ||   |  | ||    ||||     ||| ||  | 
AAGCATCTGAAGCTGGATTTGGCAATGAAATGTACAAGATCTTAACAGCGGGAGCCTTGAGTGTCATGTTAAACCGATCTTTGATCATCGGGCAAACAAGgcatatggatttacactctgctacttttcatgtgtatctttgatttgactattatgcgattggtcggaagcattgagttctatgaatttgc-ttcttttcc-

upper sequence: GLYMA16G26160.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G26950.1 (Arabidopsis thaliana), 5'ss of exon 2
AGGCAAGTGAGGCAGGTTTTGGGAATGAAATGTACAAGGTCTTAACTGCTGCAGCACTTAGTATAATGCTAAACCGGTCCTTGATCATTGGTCAAACCAGgcatat--tggttttttctcaagcctttctaatttttct--tttcacttttaagaacttt----tacattctctcaactgaaatttagagaatccatg--ttcattggct--------
|  ||   || || || ||||| || |||||||| ||| |||||||  | |||||| | || |||||| ||||| | |||||||||||||| || |||||||||||  ||||| |||||||| ||||| |   | |  |   |  ||| |||  |   ||    ||  || | | |  ||   | |  | | | | |   |||  ||| |        
AAACAGCAGAAGCTGGATTTGGAAACGAAATGTATAAGATCTTAACATCAGCAGCATTGAGCATAATGTTAAACAGATCCTTGATCATTGGCCAGACCAGgcatatattggttctttctcaatcctttttctctatattaactgaactgttactatgcttgttgtagtttgtgttatttgtcttgtttatatttctttctttctctgggtatcctcag

upper sequence: GLYMA16G26160.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv14s0068g01550.t01 (Vitis vinifera), 5'ss of exon 2
AGGCAAGTGAGGCAGGTTTTGGGAATGAAATGTACAAGGTCTTAACTGCTGCAGCACTTAGTATAATGCTAAACCGGTCCTTGATCATTGGTCAAACCAGgcatattggttttttctcaagcctttctaatttttcttttcacttttaagaacttttacattctctcaactgaaatttaga-gaatccatgttcattg--gct--
|||||   || ||||| ||||| ||||||||||||||| |||| |||||||||||| | ||||| ||| | ||||||||| ||||||| || ||||||||||||||||||| |||||| |||||||||  ||| | ||   | ||       |||||   |    | || | |  | || |  ||| |  |||   ||  ||   
AGGCATCAGAAGCAGGATTTGGCAATGAAATGTACAAGATCTTGACTGCTGCAGCATTGAGTATCATGTTGAACCGGTCCCTGATCATCGGGCAAACCAGgcatattggttctttctccagcctttctgttttatattcaaaatt-----ggcttttctctataatgaatttagttataaacaaatgctagttttgtgtagcctt