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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGCTCCAAGAAGTACGCTGTTCAGTCCGATTGGAAGGCGCACTCCAAAGTCTGCGGCACCAGAGAGTATAAGTGCGACTGTGGAACCGTTTTCTCCAGgttcccttttttttttttttttctttctctctcttggttttgtctaatttgttttgttctgttttactccgctccactctaaaggcttgtttggttgttgggatttgaag

Basic information

species Glycine max
transcript GLYMA16G25550.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G25550.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os03g10140.1 (Oryza sativa), 5'ss of exon 2
AGTGCTCCAAGAAGTACGCTGTTCAGTCCGATTGGAAGGCGCACTCCAAAGTCTGCGGCACCAGAGAGTATAAGTGCGACTGTGGAACCGTTTTCTCCAGgttcccttttttttttttttttctttctctctcttggttttgtctaatttgtt--ttgttctgttttactccgctccactctaaaggcttgtttggttgttgggatttgaag
||||||||||||||||||| || |||||||| |||||||||||| ||||   ||||||| || | |||||    |||||||| || ||| | |||||  ||| |   ||   | |   ||  | | |  ||||     | |     |   |       | |||     |    | || |     ||                          
AGTGCTCCAAGAAGTACGCCGTCCAGTCCGACTGGAAGGCGCACACCAAGACCTGCGGCTCCCGCGAGTACCGCTGCGACTGCGGCACCTTATTCTCACGgtccgtcttccctctcgattcccatccaatctccatcctctaatcgagcagccgccgatactgaccggcgaatcgccgccgcgcag--------------------------

upper sequence: GLYMA16G25550.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G171073_T02 (Zea mays), 5'ss of exon 2
AGTGCTCCAAGAAGTACGCTGTTCAGTCCGATTGGAAGGCGCACTCCAAAGTCTGCGGCACCAGAGAGTATAAGTGCGACTGTGGAACCGTTTTCTCCAGgttcccttttttttttttttttctttctctctcttggttttg-tctaatt-tgttttgttctgttttactccgctccact--ctaaaggcttgtttggttgttgggat-ttgaag
||||||||||||||||||| || ||||| || ||||||||||||  |||   ||||||| || | |||||    ||||| || || ||| | |||||| ||| |    | ||  |  |    ||    ||  ||   | | | ||   |   |  ||| | |||    | |   |||  |  || |    |  || |   ||  | |  ||| ||
AGTGCTCCAAGAAGTACGCCGTGCAGTCGGACTGGAAGGCGCACGTCAAGACCTGCGGCTCCCGCGAGTACCGCTGCGATTGCGGCACCCTCTTCTCCCGgtccgtcctcttcctcctccccctcctgcttgctcaatctcgctccggtcacgaattgct-tgtgccccccaattccgttgactgacatgtgtttcgaccgtgcgcacgttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120533267|gb|EH261400.1|EH261400
EST:     GTCTGCGGCACCAGAGAGTATAAGTGCGACTGTGGAACCGTTTTCTCCAG                         GAGGGATAGCTTCATCACTCATAGGGCGTTTTGCGATGTGTTGGCGGAGGA
genomic: GTCTGCGGCACCAGAGAGTATAAGTGCGACTGTGGAACCGTTTTCTCCAGgttccctttt ... ggatttgaagGAGGGATAGCTTCATCACTCATAGGGCGTTTTGCGATGTGTTGGCGGAGGA
EST: gi|120534133|gb|EH262266.1|EH262266
EST:     GTCTGCGGCACCAGAGAGTATAAGTGCGACTGTGGAACCGTTTTCTCCAG                         GAGGGATAGCTTCATCACTCATAGGGCGTTTTGCGATGTGTTGGCGGAGGA
genomic: GTCTGCGGCACCAGAGAGTATAAGTGCGACTGTGGAACCGTTTTCTCCAGgttccctttt ... ggatttgaagGAGGGATAGCTTCATCACTCATAGGGCGTTTTGCGATGTGTTGGCGGAGGA
EST: gi|120533468|gb|EH261601.1|EH261601
EST:     GTCTGCGGCACCAGAGAGTATAAGTGCGACTGTGGAACCGTTTTCTCCAG                         GAGGGATAGCTTCATCACTCATAGGGCGTTTTGCGATGTGTTGGCGGAGGA
genomic: GTCTGCGGCACCAGAGAGTATAAGTGCGACTGTGGAACCGTTTTCTCCAGgttccctttt ... ggatttgaagGAGGGATAGCTTCATCACTCATAGGGCGTTTTGCGATGTGTTGGCGGAGGA