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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCATCTTGTGTCACTTGTTGGATATTGCATTTGTGGGGGGCAAAGAATGTTGGTCTATGAATTTGTTCCCAATTCGACTTTGGAACATCACCTTCATGgtaagtatattgcttatgtatggttttgattgatgtatgattatttttaattgacttggttctgattcttttttaagaaaatcaagttggattctttttc...

Basic information

species Glycine max
transcript GLYMA16G25490.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G25490.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv04s0023g01570.t01 (Vitis vinifera), 5'ss of exon 2
CGCCATCTTGTGTCACTTGTTGGATATTGCATTTGTGGGGGGCAAAGAATGTTGGTCTATGAATTTGTTCCCAATTCGACTTTGGAACATCACCTTCATGgtaagtatattgcttatgtatggttttgattgatgtatgattatttttaattgacttggttctgattcttttttaagaaaa------tcaagttggattctttttc--------------------------------------------------------
    |||||||||||||||| ||||||||||||  ||  |||||  | |||||||| ||||||||||||| |||    || |||||||| ||||||||||||||||     ||| ||| |     || | |||  |     |  || ||  | |       || |||  |    || | |       || | |  |  |   ||||                                                        
----ATCTTGTGTCACTTGTGGGATATTGCATTGCTGATGGGCAGCGGATGTTGGTTTATGAATTTGTTCACAACAAAACATTGGAACACCACCTTCATGGTAAgttgtgagctcatggactagctt-actgacattaccctgcttctatataaaacaaacctcatttatacagaatagatgtcctttccaatgagcattgctttctaacagtcaatttttttcctaatcatttcaattatcaaaatttcagttgcaggaag