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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATGAGCAGGAGGAGTTTTGCGTTTAAGGGAATTGTGGCCTCTGGCGTTTCGGTCGCGGCTTCTACTCTCACAGCCGAAGCAGAACCATCTTCCAAAGgttagtgactgtttttagtccttcaaatctgggtctgtcttttttttagtcttttaagttaaaatttgcattttttagtccatcaaatttgcaaaatgtt...

Basic information

species Glycine max
transcript GLYMA16G25200.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213604690|gb|DB960469.1|DB960469
EST:     TTCGGTCGCGGCTTCTACTCTCACAGCCGAAGCAGAACCATCTTCCAAAG                         GTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGA
genomic: TTCGGTCGCGGCTTCTACTCTCACAGCCGAAGCAGAACCATCTTCCAAAGgttagtgact ... ttgggttcagGTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGA
EST: gi|209728317|gb|BW658529.1|BW658529
EST:     TTCGGTCGCGGCTTCTACTCTCACAGCCGAAGCAGAACCATCTTCCAAAG                         GTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGA
genomic: TTCGGTCGCGGCTTCTACTCTCACAGCCGAAGCAGAACCATCTTCCAAAGgttagtgact ... ttgggttcagGTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGA
EST: gi|209725699|gb|BW663190.1|BW663190
EST:     TTCGGTCGCGGCTTCTACTCTCACAGCCGAAGCAGAACCATCTTCCAAAG                         GTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGA
genomic: TTCGGTCGCGGCTTCTACTCTCACAGCCGAAGCAGAACCATCTTCCAAAGgttagtgact ... ttgggttcagGTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGA
EST: gi|192301616|gb|FG998468.1|FG998468
EST:     TTCGGTCGCGGCTTCTACTCTCACAGCCGAAGCAGAACCATCTTCCAAAG                         GTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGA
genomic: TTCGGTCGCGGCTTCTACTCTCACAGCCGAAGCAGAACCATCTTCCAAAGgttagtgact ... ttgggttcagGTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGA
EST: gi|18692833|gb|BM521681.1|BM521681
EST:     TTCGGTCGCGGCTTCTACTCTCACAGCCGAAGCAGAACCATCTTCCAAAG                         GTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGA
genomic: TTCGGTCGCGGCTTCTACTCTCACAGCCGAAGCAGAACCATCTTCCAAAGgttagtgact ... ttgggttcagGTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGA
EST: gi|151399533|gb|EV269404.1|EV269404
EST:     TTCGGTCGCGGCTTCTACTCTCACAGCCGAAGCAGAACCATCTTCCAAAG                         GTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGA
genomic: TTCGGTCGCGGCTTCTACTCTCACAGCCGAAGCAGAACCATCTTCCAAAGgttagtgact ... ttgggttcagGTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGA
EST: gi|213591367|gb|DB955715.1|DB955715
EST:     TTCGGTCGCGGCTTCTACTCTCACAGCCGAAGCAGAACCATCTTCCAAAG                         GTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGA
genomic: TTCGGTCGCGGCTTCTACTCTCACAGCCGAAGCAGAACCATCTTCCAAAGgttagtgact ... ttgggttcagGTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGA
EST: gi|20448288|gb|BQ252412.1|BQ252412
EST:     TTCGGTCGCGGCTTCTACTCTCACAGCCGAAGCAGAACCATCTTCCAAAG                         GTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGA
genomic: TTCGGTCGCGGCTTCTACTCTCACAGCCGAAGCAGAACCATCTTCCAAAGgttagtgact ... ttgggttcagGTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGA
EST: gi|13125828|gb|BG316398.1|BG316398
EST:     TTCGGTCGCGGCTTCTACTCTCACAGCCGAAGCAGAACCATCTTCCAAAG                         GTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGA
genomic: TTCGGTCGCGGCTTCTACTCTCACAGCCGAAGCAGAACCATCTTCCAAAGgttagtgact ... ttgggttcagGTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGA
EST: gi|151405996|gb|EV275811.1|EV275811
EST:     TTCGGTCGCGGCTTCTACTCTCACAGCCGAAGCAGAACCATCTTCCAAAG                         GTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGA
genomic: TTCGGTCGCGGCTTCTACTCTCACAGCCGAAGCAGAACCATCTTCCAAAGgttagtgact ... ttgggttcagGTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGA
EST: gi|120529684|gb|EH257818.1|EH257818
EST:     TTCGGTCGCGGCTTCTACTCTCACAGCCGAAGCAGAACCATCTTCCAAAG                         GTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGA
genomic: TTCGGTCGCGGCTTCTACTCTCACAGCCGAAGCAGAACCATCTTCCAAAGgttagtgact ... ttgggttcagGTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGA
EST: gi|20814627|gb|BQ299105.1|BQ299105
EST:     TTCGGTCTCGGCTTCTACTCTCACAGCCGAAGCAGAACCATCTTCCAAAG                         GTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGA
genomic: TTCGGTCGCGGCTTCTACTCTCACAGCCGAAGCAGAACCATCTTCCAAAGgttagtgact ... ttgggttcagGTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGA
EST: gi|209716247|gb|BW657550.1|BW657550
EST:     TTCGGTCGCGGCTTCTACTCTCACAGCCGAAGCAGAACCATCTTCCAAAG                         GTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGA
genomic: TTCGGTCGCGGCTTCTACTCTCACAGCCGAAGCAGAACCATCTTCCAAAGgttagtgact ... ttgggttcagGTTTTGAAAGATTGCCGTACAAGCCGGAAGGGTACAATTATTGGACATGGA