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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACTTCTTTGGTGCTCCAGGTTCTTTCTATGGCAGGATTTTCTCAAACCAAAGTGTGCATTTTATCCATTCCTCTTATAGCCTTCAATGGCTATCTAAGgtaggtatatatatatatatatatatatatatatatatatatatatatatatatatatattagttcgattgacatttgtattttgtaggagagtttaacc...

Basic information

species Glycine max
transcript GLYMA16G24740.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G24740.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv04s0023g02220.t01 (Vitis vinifera), 5'ss of exon 2
CTACTTCTTTGGTGCTCCAGGTTCTTTCTATGGCAGGATTTTCTCAAACCAAAGTGTGCATTTTATCCATTCCTCTTATAGCCTTCAATGGCTATCTAAGgtaggtatatatatatatatatatatatatatatatatatatatatatatatatata--tattagttcgattgacatttgtattttgtaggagagtttaacc
 || ||| | || | ||| |||||||||||||||||| ||||| | |||| |||| | |||||| ||||||| ||||| ||| | || ||||| ||| ||||     ||||| | ||  | || |  ||||   ||||||  |   | | | |   |   || |  |  |||   | |   ||| |  |  ||         
TTATTTCATGGGAGTTCCGGGTTCTTTCTATGGCAGGCTTTTCCCTAACCGAAGTCTACATTTTGTCCATTCTTCTTACAGCGTGCATTGGCTGTCTCAGgtgaccctatatttgtacttttacagctatagtaatatattgactgacaaagaaggaaccatgaaattcatttggagtgcaattgttcattag---------

upper sequence: GLYMA16G24740.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv04s0023g02310.t01 (Vitis vinifera), 5'ss of exon 2
CTACTTCTTTGGTGCTCCAGGTTCTTTCTATGGCAGGATTTTCTCAAACCAAAGTGTGCATTTTATCCATTCCTCTTATAGCCTTCAATGGCTATCTAAGgtaggtatatatatatatatatatatatatatatatatatatatatatatatatatatattagttcgattgacatttgtattttgtaggagagtttaacc
 | | |    || | |||||||||||||||||||||| | ||| | | | ||||| | |||||||||||||| ||||| || || || ||||| ||| | ||    || | |     ||  || |||    |  |    |  ||  | |   |   || | |||| ||      |   |  ||  |  |           
TTTCGTAACCGGAGTTCCAGGTTCTTTCTATGGCAGGCTCTTCCCCAGCGAAAGTCTTCATTTTATCCATTCTTCTTACAGTCTCCACTGGCTGTCTCATgtga--atctttgctcttaattaaatagtggttcaatcgttcattaagaagaaagcatgtcagttaga--agtttcaatcgttcatcag-----------