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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTCCTCCTCGTACTCTGCTCAATAAGCTGTCTCAGGGCAGTTATCTCACCACTCAGGAGCAATGGTTCAATCAAACCCTCGATCACTTCTCTCCCTATgtatctttctctctctcaatctctctctttttctctttaaatgcaaaatagaagtaaagttcttagcttacatgatagatagttgtaaagtgcaaccctt...

Basic information

species Glycine max
transcript GLYMA16G24270.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207734466|gb|GD710107.1|GD710107
EST:     CCACTCAGGAGCAATGGTTCAATCAAACCCTCGATCACTTCTCTCCCTAT                         GATCACCATCAATTCCGTCAACGTTACTTCGAGTTTCTAGACTATTTCCGG
genomic: CCACTCAGGAGCAATGGTTCAATCAAACCCTCGATCACTTCTCTCCCTATgtatctttct ... tgcaccacagGATCACCATCAATTCCGTCAACGTTACTTCGAGTTTCTAGACTATTTCCGG
EST: gi|208142398|gb|GD935396.1|GD935396
EST:     CCACTCAGGAGCAATGGTTCAATCAAACCCTCGATCACTTCTCTCCCTAT                         GATCACCATCAATTCCGTCAACGTTACTTCGAGTTTCTAGACTATTTCCGG
genomic: CCACTCAGGAGCAATGGTTCAATCAAACCCTCGATCACTTCTCTCCCTATgtatctttct ... tgcaccacagGATCACCATCAATTCCGTCAACGTTACTTCGAGTTTCTAGACTATTTCCGG
EST: gi|298172950|gb|HO019934.1|HO019934
EST:     CCACTCAGGAGCAATGGTTCAATCAAACCCTCGATCACTTCTCTCCCTAT                         GATCACCATCAATTCCGTCAACGCTACTACGAGTTTCTGGACTATTTCCGG
genomic: CCACTCAGGAGCAATGGTTCAATCAAACCCTCGATCACTTCTCTCCCTATgtatctttct ... tgcaccacagGATCACCATCAATTCCGTCAACGTTACTTCGAGTTTCTAGACTATTTCCGG
EST: gi|13252300|gb|BG363203.1|BG363203
EST:     CCACTCAGGAGCAATGGTTCAATCAAACCCTCGATCACTTCTCTCCCTAT                         GATCACCATCAATTCCGTCAACGTTACTTCGAGTTTCTAGACTATTTCCGG
genomic: CCACTCAGGAGCAATGGTTCAATCAAACCCTCGATCACTTCTCTCCCTATgtatctttct ... tgcaccacagGATCACCATCAATTCCGTCAACGTTACTTCGAGTTTCTAGACTATTTCCGG
EST: gi|192307849|gb|FG999328.1|FG999328
EST:     CCACTCAGGAGCAATGGTTCAATCAAACCCTCGATCACTTCTCTCCCTAT                         GATCACCATCAATTCCGTCAACGTTACTTCGAGTTTCTAGACTATTTCCGG
genomic: CCACTCAGGAGCAATGGTTCAATCAAACCCTCGATCACTTCTCTCCCTATgtatctttct ... tgcaccacagGATCACCATCAATTCCGTCAACGTTACTTCGAGTTTCTAGACTATTTCCGG
EST: gi|193530281|gb|FK483680.1|FK483680
EST:     CCACTCAGGAGCAATGGTTCAATCAAACCCTCGATCACTTCTCTCCCTAT                         GATCACCATCAATTCCG
genomic: CCACTCAGGAGCAATGGTTCAATCAAACCCTCGATCACTTCTCTCCCTATgtatctttct ... tgcaccacagGATCACCATCAATTCCG
EST: gi|192303244|gb|FG995580.1|FG995580
EST:     CCACTCAGGAGCAATGGTTCAATCAAACCCTCGATCACTTCTCTCCCTAT                         GATCACCATCAATTCCGTCAACGTTACTTCGAGTTTCTAGACTATTTCCGG
genomic: CCACTCAGGAGCAATGGTTCAATCAAACCCTCGATCACTTCTCTCCCTATgtatctttct ... tgcaccacagGATCACCATCAATTCCGTCAACGTTACTTCGAGTTTCTAGACTATTTCCGG
EST: gi|193429616|gb|FK393626.1|FK393626
EST:     CGATCACTTCTCTCCCTAT                         GATCACCATCAATTCCGTCAACGTTACTTCGAGTTTCTAGACTATTTCCGG
genomic: CGATCACTTCTCTCCCTATgtatctttct ... tgcaccacagGATCACCATCAATTCCGTCAACGTTACTTCGAGTTTCTAGACTATTTCCGG
EST: gi|105632253|gb|DW246381.1|DW246381
EST:     CCACTCAGGAGCAATGGTTCAATCAAACCCTCGATCACTTCTCTCCCTAT                         GATCACCATCAATTCCGTCAACGTTACTTCGAGTTTCTAGACTATTTCCGG
genomic: CCACTCAGGAGCAATGGTTCAATCAAACCCTCGATCACTTCTCTCCCTATgtatctttct ... tgcaccacagGATCACCATCAATTCCGTCAACGTTACTTCGAGTTTCTAGACTATTTCCGG
EST: gi|7232689|gb|AW568043.1|AW568043
EST:     CCACTCAGGAGCAATGGTTCAATCAAACCCTCGATCACTTCTCTCCCTAT                         GATCACCATCAATTCCGTCAACGTTACTTCGAGTTTCTAGACTATTTCCGG
genomic: CCACTCAGGAGCAATGGTTCAATCAAACCCTCGATCACTTCTCTCCCTATgtatctttct ... tgcaccacagGATCACCATCAATTCCGTCAACGTTACTTCGAGTTTCTAGACTATTTCCGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTTCCTCCTCGTACTCTGCTCAATAAGCTGTCTCAGGGCAGTTATCTCACCACTCAGGAGCAATGGTTCAATCAAACCCTCGATCACTTCTCTCCCTATgtatctttctctctctcaatctctctctttttctctttaaatgcaaaatagaagtaaagttcttagcttacatgatagatagttgtaaagtgcaaccctt

- - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc