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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCCTCGTTTTCTACAAAGGAAGAGCCCCTAATGGACAAAAAACTGATTGGATCATGCACGAGTATAGGCTTGAAACTGTTGAGAATGGACCTCCACAGgtaacaagcatctctatatacatttaacatatattcatacttagtgcacatataccattaccatatacccttttacgtattgtgtgtcaaattttgctga...

Basic information

species Glycine max
transcript GLYMA16G24200.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G24200.1 (Glycine max), 5'ss of exon 2
lower sequence: AT4G36160.1 (Arabidopsis thaliana), 5'ss of exon 3
GACCCTCGTTTTCTACAAAGGAAGAGCCCCTAATGGACAAAAAACTGATTGGATCATGCACGAGTATAGGCTTGAAACTGTTGAGAATGGACCTCCACAGgtaa---caagcatctctatatacatttaacatatattcatacttagtgcacatataccattac-catatacccttttacgtattgtgtgtcaaattttgctga
 || || || |||||||||||||||||||||||||| |||||||| |||||||||||||| || ||  |||| ||  | | |||||||| |||||| ||||||    |      |   ||||   ||| | ||| ||  ||  | ||   |  | |   | ||    |  |  ||      |||  | |  |     || |   
AACACTTGTGTTCTACAAAGGAAGAGCCCCTAATGGCCAAAAAACCGATTGGATCATGCATGAATACCGGCTAGAGTCAGATGAGAATGCACCTCCTCAGgtattctcgttttacctgatatcattttgaaatacatagat-ttgaggataattgttatactagatgttcaatctaaattttatcctctaccgggaattac---

upper sequence: GLYMA16G24200.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv04s0023g03110.t01 (Vitis vinifera), 5'ss of exon 2
GACCCTCGTTTTCTACAAAGGAAGAGCCCCTAATGGACAAAAAACTGATTGGATCATGCACGAGTATAGGCTTGAAACTGTTGAGAATGGACCTCCACAGgtaacaagcatctctatatacatttaacatatattcatacttagtgcacatataccattaccatatacccttttacgtattgtgtgtcaaattttgctga-------
    ||||| || ||||||||  |||| || ||||| || |||||||| ||||| ||||||||||| ||||| ||| | |  ||||||||||||||||||| ||  |  | ||   | |   || |  |  || |||  | |  |||    || | |   |  |     |||| |   |||   | |     ||   ||        
----CTCGTCTTTTACAAAGGGCGAGCGCCCAATGGGCAGAAAACTGACTGGATTATGCACGAGTACAGGCTCGAATCGGAAGAGAATGGACCTCCACAGGCAAgtataaccttcct-ttttttgactaattaatcaaccct--tgccatcatgcaacctctttcctgtctttcaatcattccatttagccattaagtgggatgttt