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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCAGCTGATTAGCTTTAGGGAACTCCTGGATGTCTTTTGGTCAAGTCACGATCCTAGGCAAGTGTATGGCCAAGGTCCTGATGTGGGTAGTCAGTACAGgtaggaggagcactgttgccaaccacaatttcttgtgatctacctccatatccagtctcatgctgagtgctatttacttaactatacctatattctggcag

Basic information

species Glycine max
transcript GLYMA16G24130.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21256110|gb|BQ452998.1|BQ452998
EST:     GATCCTAGGCAAGTGTATGGCCAAGGTCCTGATGTGGGTAGTCAGTACAG                         ATCTATTATTTTTGTTAATGGAACCGAAGAATCAAGAATGGCTGCTGTCAG
genomic: GATCCTAGGCAAGTGTATGGCCAAGGTCCTGATGTGGGTAGTCAGTACAGgtaggaggag ... attctggcagATCTATTATTTTTGTTAATGGAACCGAAGAATCAAGAATGGCTGCTGTCAG
EST: gi|213610254|gb|DB958823.1|DB958823
EST:     GATCCTAGGCAAGTGTATGGCCAAGGTCCTGATGTGGGTAGTCAGTACAG                         ATCTATTATTTTTGTTAATGGAACC
genomic: GATCCTAGGCAAGTGTATGGCCAAGGTCCTGATGTGGGTAGTCAGTACAGgtaggaggag ... attctggcagATCTATTATTTTTGTTAATGGAACC
EST: gi|27425046|gb|CA936566.1|CA936566
EST:     GATCCTAGGCAAGTGTATGGCCAAGGTCCTGATGTGGGTAGTCAGTACAG                         ATCTATTATTTTTGTTAATGGAACCGAAGAATCAAGAATGGCTGCTGTCAG
genomic: GATCCTAGGCAAGTGTATGGCCAAGGTCCTGATGTGGGTAGTCAGTACAGgtaggaggag ... attctggcagATCTATTATTTTTGTTAATGGAACCGAAGAATCAAGAATGGCTGCTGTCAG
EST: gi|298187878|gb|HO031835.1|HO031835
EST:     GATCCTAGGCAAGTGTATGGCCAAGGTCCTGATGTGGGTAGTCAGTACAG                         ATCTATTATTTTTGTTAATGGAACCGAAGAATCAAGAATGGCTGCTGTCAG
genomic: GATCCTAGGCAAGTGTATGGCCAAGGTCCTGATGTGGGTAGTCAGTACAGgtaggaggag ... attctggcagATCTATTATTTTTGTTAATGGAACCGAAGAATCAAGAATGGCTGCTGTCAG
EST: gi|298181497|gb|HO022936.1|HO022936
EST:     GATCCTAGGCAAGTGTATGGCCAAGGTCCTGATGTGGGTAGTCAGTACAG                         ATCTATTATTTTTGTTAATGGAACCGAAGAATCAAGAATGGCTGCTGTCAG
genomic: GATCCTAGGCAAGTGTATGGCCAAGGTCCTGATGTGGGTAGTCAGTACAGgtaggaggag ... attctggcagATCTATTATTTTTGTTAATGGAACCGAAGAATCAAGAATGGCTGCTGTCAG