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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAAATTCTACCAACCAGAACCTATCTGTTCCAAAGGGATGGCGCAATGGGGACTGGATCTGTAACTGTGGCTTCCACAATTACTCATCCCGCTCTCAGgtatgtcttgaattctacttgaaaatgatgttgagctatatagtatacaagagttgaactattcattgtttttctgattcaatattgaaattatttgcag

Basic information

species Glycine max
transcript GLYMA16G23920.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G23920.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv04s0023g03280.t01 (Vitis vinifera), 5'ss of exon 2
TGAAAATTCTACCAACCAGAACCTATCTGTTCCAAAGGGATGGCGCAATGGGGACTGGATCTGTAACTGTGGCTTCCACAATTACTCATCCCGCTCTCAGgtatgtcttgaattctacttgaaaatgatg--ttgagctatatagtatacaagagttgaactattcattgtttttct-gattcaatattgaaattatttgcag----------------------------
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TCCAAACCATGCAAATCAGCTCCTTATGGTTCCTAAAGGATGGCGCAATGGTGACTGGATATGCAACTGTGGCTTCCATAATTATTCTTCTCGTGCACAGgtaca-cccaagctatccggacatctaatgagttgaaattcttaaaaactgagaac-aaatagtgtaaggctccagtaggctgtttcttcacattatttacatatctgatcttgcttttgtttatttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151408697|gb|EV278505.1|EV278505
EST:     GGGACTGGATCTGTAACTGTGGCTTCCACAATTACTCATCCCGCTCTCAG                         TGTAAAAAGTGCAATGCTTTTCCTTCTG
genomic: GG-ACTGGATCTGTAACTGTGGCTTCCACAATTACTCATCCCGCTCTCAGgtatgtcttg ... ttatttgcagTGTAAAAAGTGCAATGCTTTTCCTCCTG
EST: gi|192295986|gb|FG993379.1|FG993379
EST:     GGGACTGGATCTGTAACTGTGGCTTCCACAATTACTCATCCCGCTCTCAG                         TGTAAAA-GTGC
genomic: GGGACTGGATCTGTAACTGTGGCTTCCACAATTACTCATCCCGCTCTCAGgtatgtcttg ... ttatttgcagTGTAAAAAGTGC