Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATAGACAATTCGGAATGGATGCGTAACGGGGATTACTCTCCTTCTCGATTTCAAGCCCAAGCAGACGCCGCCAATCTCATTTGCGGTGCTAAAACCCAGgtgtgaagtgaaatcctattctatcgattcttaacactcccttatctgtgattgccactttgagtagaaaagttaaatttaacgaatattgttgtgtttcagacaagggtttgaatttatttaattggaggtttaggaaattgcggttgggttcaatttgtgctgattttttttttttcttttgatgatttag

Basic information

species Glycine max
transcript GLYMA16G23590.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G23590.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G165926_T01 (Zea mays), 5'ss of exon 2
TATAGACAATTCGGAATGGATGCGTAACGGGGATTACTCTCCTTCTCGATTTCAAGCCCAAGCAGACGCCGCCAATCTCATTTGCGGTGCTAAAACCCAGgtgtgaagtgaaatcctattctatcgattcttaacactcccttatctgtgattgccactttgagtagaaaagttaaatttaacgaatattgttgtgtttcagacaagggtttgaatttatttaattggaggtttaggaaattgcggttgggttcaatttgtgctgattttttttttttcttttgatgatttag
 ||||||||||||||||||||||| ||||| || ||| |||| || || || || || || || || |||| ||| ||||| ||||| || || ||||||||            || || | | |||  |  | |  ||     |  |   || |   | ||||        |      |  || || |  |||  ||   |     || | |                                                                                
CATAGACAATTCGGAATGGATGCGGAACGGCGACTACGCTCCGTCGCGGTTCCAGGCGCAGGCCGATGCCGTCAACCTCATCTGCGGCGCCAAGACCCAGgtacc---cccggccccatcc-accgaacca-atcgatcgtactttcgcagtttct--tgtgagctagggtttctgggattccggatctgattgc-ttctggttgttgggtggtgcag---------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192324921|gb|FK015387.1|FK015387
EST:     TTCAAGCCCAAGCAGACGCCGCCAATCTCATTTGCGGTGCTAAAACCCAG                         TCTAATCCAGAAAATACGGTGGGAGTTCTCACGATGGCGGGGAAGGGCGTT
genomic: TTCAAGCCCAAGCAGACGCCGCCAATCTCATTTGCGGTGCTAAAACCCAGgtgtgaagtg ... gatgatttagTCTAATCCAGAAAATACGGTGGGAGTTCTCACGATGGCGGGGAAGGGCGTT