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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTATGTGCCAACTGTTTTCGACAATTTCAGCGCAAATGTGGTTGTGAATGGAGCCACTGTTAATCTAGGATTATGGGACACTGCCGgtactactattattttttctttgtcaattttgggatgttgagttctttttagatttttattattttattacgtggaatag

Basic information

species Glycine max
transcript GLYMA16G23340.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G23340.1 (Glycine max), 5'ss of exon 2
lower sequence: AT2G17800.2 (Arabidopsis thaliana), 5'ss of exon 3
GATTATGTGCCAACTGTTTTCGACAATTTCAGCGCAAATGTGGTTGTGAATGGAGCCACTGTTAATCTAGGATTATGGGACACTGCCGgtact-actat-tatt-----ttttctttgtcaattttgggatgt-tgagttct----ttttagatttttattattttattacgtggaatag
|||||||| || ||||||||||| || || ||||||||||||||||| |||||||||||||| ||||| ||  ||||||| || || |||||| ||||  || |     | ||  ||   | |   || |  | || | | |    | | | | |||| || | || ||      |    
GATTATGTACCGACTGTTTTCGATAACTTTAGCGCAAATGTGGTTGTTAATGGAGCCACTGTGAATCTTGGGCTATGGGATACCGCAGgtactgactaaataatagggatcttacttagtagtagcggcagctatgggatttggggtctgaaacttttgttttgttgttgtaaacag---

upper sequence: GLYMA16G23340.1 (Glycine max), 5'ss of exon 2
lower sequence: AT4G35950.1 (Arabidopsis thaliana), 5'ss of exon 2
GATTATGTGCCAACTGTTTTCGACAATTTCAGCGCAAATGTGGTTGTGAATGGAGCCACTGTTAATCTAGGATTATGGGACACTGCCGgtactactattattttttctttgtcaattttgggatgttgagttcttttta-------gatttttattattttattacgtggaatag
|||||||| || ||||||||||| || || || |||||||||||||| ||||||||||| || ||||| ||||| ||||| ||||| |||| |   || ||  |    ||   |||  | ||     ||| | |  ||        | |    ||||| || ||   |     ||
GATTATGTTCCGACTGTTTTCGATAACTTTAGTGCAAATGTGGTTGTTAATGGAGCCACGGTGAATCTTGGATTGTGGGATACTGCAGgtaatga-atgatgatccaattcataatccttggtgagagagctttccttgatgaatcggtcgaaattatgtttttggtttatgcag

upper sequence: GLYMA16G23340.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv04s0023g03860.t01 (Vitis vinifera), 5'ss of exon 3
GATTATGTGCCAACTGTTTTCGACAATTTCAGCGCAAATGTGGTTGTGAATGGAGCCACTGTTAATCTAGGATTATGGGACACTGCCGgtactactattattttttctttgtcaattttgggatgttgagttctttttag-atttttattattttattacgtggaatag----------------
|||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| || || || ||||| ||||| ||||     |   |   || |||     ||||  | | |  | | ||    |  ||||| ||||||||||  |   ||||                  
GATTATGTGCCAACTGTTTTCGACAATTTCAGTGCAAATGTGGTTGTCAATGGGGCCACTGTTAACCTTGGGTTGTGGGATACTGCTGgtagcttcacagtcacttgtttcc---ttttttgttttcaattactaacaaacattttgattattttatggctctgaatttgttctctttggaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192330642|gb|FK021961.1|FK021961
EST:     TGTGGTTGTGAATGGAGCCACTGTTAATCTAGGATTATGGGACACTGCCG                         GTCAAGAGGATTATAATAGATTACGACCTTTGAGTTATCGTGGTGCCGATG
genomic: TGTGGTTGTGAATGGAGCCACTGTTAATCTAGGATTATGGGACACTGCCGgtactactat ... cgtggaatagGTCAAGAGGATTATAATAGATTACGACCTTTGAGTTATCGTGGTGCCGATG