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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATTTTCATTGGAATTTTGAGGATGTTGCTAAATCAATTGTGTGCATGATGATGTCCGGCCCATTCCTGACAGGATATACACAGgtagtgttttttttcttatttatataaagttttgccaattgctattggatgggaatatctcactgacataagtataactttgaattattgggttgttaatttttttag

Basic information

species Glycine max
transcript GLYMA16G19340.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G19340.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv08s0105g00590.t01 (Vitis vinifera), 5'ss of exon 5
GAAATTTTCATTGGAATTTTGAGGATGTTGCTAAATCAATTGTGTGCATGATGATGTCCGGCCCATTCCTGACAGGATATACACAGgtagtgttttttttcttatttatataaagttttgccaattgctattggatgggaatatctcactgacataagtataactttgaattattgggttgttaatttttttag-
| || || || |||||||| ||||||||||| ||||||||||| |||||||| ||||| |||||||  || || || ||||||||||||       |||||| ||  | |  ||||    |||||||  ||| |   | ||| |||     |  ||  | || |||  ||  |||   |    ||  |||| |  
GGAACTTCCACTGGAATTTGGAGGATGTTGCCAAATCAATTGTTTGCATGATTATGTCTGGCCCATGTCTCACTGGCTATACACAGgta------cttttctgatggagaggaagtac--ccaattgggatttgggagtaat-tcttgtaaaagtacttttagcttataacaattttatcagaaacattttcatg