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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTATGGTGCTGCTTCTCTCCACCAAGAAGGACACTCCTGTAATTTGGCGTGTCCTTAGTGGCTTGTATCACAAACGCATTACTTTCATTGATGCAGAGgtatgtaaaaggggtggatgtgaaacacatttttctctgttaatttctttctttggacctataaggaaaatcttatgctttgttttaaagggtaagatttaatgtatatcttgaatgatttgtag

Basic information

species Glycine max
transcript GLYMA16G19300.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G19300.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv08s0217g00090.t01 (Vitis vinifera), 5'ss of exon 5
GCCTATGGTGCTGCTTCTCTCCACCAAGAAGGACACTCCTGTAATTTGGCGTGTCCTTAGTGGCTTGTATCACAAACGCATTACTTTCATTGATGCAGAGgtatgtaaaaggg----gtggatgtgaaacacatttttctctgttaatttctttctttggacctataaggaaaatcttatgctttgttttaaagggtaagatttaatgtatatcttgaatgatttgtag
 |||| |||| ||||||| || |||||||||||||||||||| || ||||||| |||||||||||||||||  |||||  | |  |||  ||||| ||||||| |  | ||      |  ||  || |||     |||   |   ||||  |  |  |  |  | | |   |    |||    |||||  |  |   |||||||                         
ACCTAGGGTGATGCTTCTTTCTACCAAGAAGGACACTCCTGTGATATGGCGTGCCCTTAGTGGCTTGTATCGTAAACGATTCATCTTCTATGATGTAGAGgtaagccacagctccttgcagacttgtaacttgaattttcttagcaattattagccctctaattcttaatta---tttagaaattgttc-actgtaaaagattt-------------------------