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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAAGGTGGGGCCGTGCCGTTGCCGGTGCCGCCGCCTCCGTTGTTGCACACTCCGCCTTTGGAAAATGTCGATTCCTGGACCGATCAACAGCCTTTGAGgtagtaccatgactctgatgcactaactcagtaattgtttgttctgtgtgttgttgctttttaacttgcactcgtgtttag

Basic information

species Glycine max
transcript GLYMA16G18450.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298194223|gb|HO040871.1|HO040871
EST:     ACTCCGCCTTTGGAAAATGTCGATTCCTGGACCGATCAACAGCCTTTGAG                         TGAACCGAGGAAGGACGCTGCGGCTGCAAGTGAAAGTATTGGCCTCAATGA
genomic: ACTCCGCCTTTGGAAAATGTCGATTCCTGGACCGATCAACAGCCTTTGAGgtagtaccat ... tcgtgtttagTGAACCGAGGAAGGACGCTGCGGCTGCAAGTGAAAGTATTGGCCTCAATGA
EST: gi|120496126|gb|EH224293.1|EH224293
EST:     ACTCCGCCTTTGGAAAATGTCGATTCCTGGACCGATCAACAGCCTTTGAG                         TGAACCGAGGAAGGACGCTGCGGCTGCAAGTGAAAGTATTGGCCTCAATGA
genomic: ACTCCGCCTTTGGAAAATGTCGATTCCTGGACCGATCAACAGCCTTTGAGgtagtaccat ... tcgtgtttagTGAACCGAGGAAGGACGCTGCGGCTGCAAGTGAAAGTATTGGCCTCAATGA
EST: gi|208112351|gb|GD913708.1|GD913708
EST:     ACTCCGCCTTTGGAAAATGTCGATTCCTGGACCGATCAACAGCCTTTGAG                         TGAACCGAGGAAGGACGCTGCGGCTGCAAGTGAAAGTATTGGCCTCAATGA
genomic: ACTCCGCCTTTGGAAAATGTCGATTCCTGGACCGATCAACAGCCTTTGAGgtagtaccat ... tcgtgtttagTGAACCGAGGAAGGACGCTGCGGCTGCAAGTGAAAGTATTGGCCTCAATGA
EST: gi|16104800|gb|BI892540.1|BI892540
EST:     ACTCCGCCTTTGGAAAATGTCGATTCCTGGACCGATCAACAGCCTTTGAG                         TGAACCGAGGAAGGACGCTGCGGCTGCAAGTGAAAGTATTGGCCTCAATGA
genomic: ACTCCGCCTTTGGAAAATGTCGATTCCTGGACCGATCAACAGCCTTTGAGgtagtaccat ... tcgtgtttagTGAACCGAGGAAGGACGCTGCGGCTGCAAGTGAAAGTATTGGCCTCAATGA
EST: gi|120495145|gb|EH223312.1|EH223312
EST:     ACTCCGCCTTTGGAAAATGTCGATTCCTGGACCGATCAACAGCCTTTGAG                         TGAACCGAGGAAGGACGCTGCGGCTGCAAGTGAAAGTATTGGCCTCAATGA
genomic: ACTCCGCCTTTGGAAAATGTCGATTCCTGGACCGATCAACAGCCTTTGAGgtagtaccat ... tcgtgtttagTGAACCGAGGAAGGACGCTGCGGCTGCAAGTGAAAGTATTGGCCTCAATGA
EST: gi|208075195|gb|GD877666.1|GD877666
EST:     CTCCGCCTTTGGAAAAATGTCGATTCCTGGACCGATCAACAGCCTTTGAG                         TGAACCGAGGAAGGACGCTGCGGCTGCAAGTGAAAGTATTGGCCTCAATGA
genomic: CTCCGCCTTTGG-AAAATGTCGATTCCTGGACCGATCAACAGCCTTTGAGgtagtaccat ... tcgtgtttagTGAACCGAGGAAGGACGCTGCGGCTGCAAGTGAAAGTATTGGCCTCAATGA
EST: gi|298195719|gb|HO044110.1|HO044110
EST:     ACTCCGCCTTTGGAAAATGTCGATTCCTGGACCGATCAACAGCCTTTGAG                         TGAACCGAGGAAGGACGCTGCGGCTGCAAGTGAAAGTATTGGCCTCAATGA
genomic: ACTCCGCCTTTGGAAAATGTCGATTCCTGGACCGATCAACAGCCTTTGAGgtagtaccat ... tcgtgtttagTGAACCGAGGAAGGACGCTGCGGCTGCAAGTGAAAGTATTGGCCTCAATGA