Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAGCTACAATTATGGGTCCTGTAGATAGCCCATTTGCTGGCGGTGTGTTTATTGTGTCAATTCACTTCCCTCCTGATTATCCTTTCAAACCACCCAAGgtaaaacaaaagtcttactttattcaaacttatgcgcgtgtctaactatatctatgcacacactttataggacaactttattttatgttaactatgatat...

Basic information

species Glycine max
transcript GLYMA16G17800.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G17800.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv19s0015g01190.t01 (Vitis vinifera), 5'ss of exon 3
GCAAGCTACAATTATGGGTCCTGTAGATAGCCCATTTGCTGGCGGTGTGTTTATTGTGTCAATTCACTTCCCTCCTGATTATCCTTTCAAACCACCCAAGgtaa---aacaaaagtcttactttattcaaacttatgcgcgtgtctaactatatctatgcacacactttataggacaactttatt-ttatgttaactatgatat--
|||||| || |||||||||||    || ||||| || ||||| ||||||||| | ||||| || |||||||| || ||||| || ||||| |||||||||||||   || ||||    |  ||| ||        || | ||| || | | |     |  |  || |        ||| || |||  ||   |||  |||  |   
GCAAGCAACTATTATGGGTCCAAGTGACAGCCCTTTCGCTGGAGGTGTGTTTCTGGTGTCCATCCACTTCCCACCGGATTACCCATTCAAGCCACCCAAGgtaacagaaaaaaaactgtgttttgttt----ccctgagtgtgactcagtgtggtc-tctatgcattgatgtacccaagttcattgctacactaaa-atgcaagga