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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCCTTGAACACCACTTACTTCAACAACTTTGAGCACTCGGGAATGCTTCTGATGTTTCTTATCTTTGGTGTTGTTGCTCTCCTCTCAGAAAAGACAAGgttagttgttgttgttgttgttcttattgttatgatgtaggccatttcttgttaaaattcatccaccaatctgcactctcctgtacctgtaatatagaag...

Basic information

species Glycine max
transcript GLYMA16G17670.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207773579|gb|GD745697.1|GD745697
EST:     ATGTTTCTTATCTTTTGGTTGTTTGTTGCTCTCCTCTCAGAAAAGACAAG                         ACGTCTTCCCTTGCCTG-AAATGCTCTTTGTTTGATTGCTGCTGCAGCATT
genomic: ATGTTTCTTATC-TTTGG-TG-TTGTTGCTCTCCTCTCAGAAAAGACAAGgttagttgtt ... tcttatgcagACGTCTTCCCTTGCCTGAAAATGCTCTTTGTTTGATTGCTGCTGCAGCATT
EST: gi|151401969|gb|EV271782.1|EV271782
EST:     CTGATGTTTCTTATCTTTGGTGTTGTTGCTCTCCTCTCAGAAAAGACAAG                         ACGTCTTCCCTTGCCTGAAAATGCTCTTTGTTTGATTGCTGCTGCAGCATT
genomic: CTGATGTTTCTTATCTTTGGTGTTGTTGCTCTCCTCTCAGAAAAGACAAGgttagttgtt ... tcttatgcagACGTCTTCCCTTGCCTGAAAATGCTCTTTGTTTGATTGCTGCTGCAGCATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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GAGCCTTGAACACCACTTACTTCAACAACTTTGAGCACTCGGGAATGCTTCTGATGTTTCTTATCTTTGGTGTTGTTGCTCTCCTCTCAGAAAAGACAAGgttagttgttgttgttgttgttcttattgttatgatgtaggccatttcttgttaaaattcatccaccaatctgcactctcctgtacctgtaatatagaag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctcct