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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCCAAGGAGTCATCAATAAGTTCTCTGCAAATTAAATACACCAGTTTTCCTGAATGCAGCGCTGACTATCAAGATTACACTCCATGCACAGATCCAAGGgtaaaaataaaattgctaacagtagtccattttctgatactatagaatttgtaaaaaaaagttttcttattgattaaggatgcttaaatttacag

Basic information

species Glycine max
transcript GLYMA16G17500.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G17500.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv02s0033g01120.t01 (Vitis vinifera), 5'ss of exon 2
CCCCAAGGAGTCATCAATAAGTTCTCTGCAAATTAAATACACCAGTTTTCCTGAATGCAGCGCTGACTATCAAGATTACACTCCATGCACAGATCCAAGGgtaaaaataaa---attgctaacagtag---tccat----tttctgatactatagaatttgtaaaaa----aaagttttcttattgattaaggatgcttaaatttacag
 |||||||| || |||   ||| |||| ||||||||||       ||| || ||||||||    || |||||||| ||||||||||| |||||||||||||||  ||| |    || ||| |    |    || ||      |   || ||  || |||||          ||| |  |   ||||  |  | ||   ||   ||||||
TCCCAAGGAATCGTCATCTAGTCCTCTCCAAATTAAATCAGTTGCTTTCCCAGAATGCAGTAGGGAATATCAAGACTACACTCCATGTACAGATCCAAGGgtatcaatcacttcatcgcttatttcaagtttctatagaccattccattctccaggatttgctttggtgtcaaattgcttacattgtgtgtgtatctctattgttacag