1 5' 3' | 2 5' 3' | 3 5' 3' |
GCCTACTGCTGGATCTCTCAGGCCTATTGTTCATGGCCAGACTCTGAAATACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgacttattctgaccccattcttgcaaaagcaactgttatgagttatgacttgctatggatcattcattggtggggtaatacaataggcttgac...
species | Glycine max |
transcript | GLYMA16G17370.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCCGGGAGAGGATTTTTCACTGGAAGAATTGAAG GCTGCAGGAATTCCCAAGAAGCTTGCTCCAACTATTGGGATTTCTGTTGATEST: gi|254339157|gb|GR847874.1|GR847874
genomic: GCCGGGAGAGGA-TTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
EST: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAG GCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGATEST: gi|209719490|gb|BW650995.1|BW650995
genomic: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
EST: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAG GCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGATEST: gi|193366313|gb|FK333688.1|FK333688
genomic: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
EST: GGGAGAGGATTTTCACCGGAAGAATTGAAG GCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGATEST: gi|20207618|gb|BQ133707.1|BQ133707
genomic: GGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
EST: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAG GCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGATEST: gi|16348456|gb|BI974051.1|BI974051
genomic: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
EST: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAG GCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGATEST: gi|208110520|gb|GD913124.1|GD913124
genomic: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
EST: AAGAATTGAAG GCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGATEST: gi|120529623|gb|EH257757.1|EH257757
genomic: AAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
EST: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAG GCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGATEST: gi|23726992|gb|BU761509.1|BU761509
genomic: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
EST: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAG GCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGATEST: gi|6915365|gb|AW396895.1|AW396895
genomic: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
EST: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAG GCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGATEST: gi|208069895|gb|GD867940.1|GD867940
genomic: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
EST: GCCGGGAGAGGATTTTCACTGGAAGAATTGAAG GCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGATEST: gi|213594019|gb|DB961935.1|DB961935
genomic: GCCGGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
EST: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAG GCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGATEST: gi|9204549|gb|BE330773.1|BE330773
genomic: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
EST: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAG GCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGATEST: gi|193562396|gb|FK518185.1|FK518185
genomic: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
EST: GCCGGGAGAGGATTTTCACTGGAAGAATTGAAG GCTGCAGGAATTCCCAAGAAACTTGCTCCAACCATTGGGATTTCTGTTGATEST: gi|193567522|gb|FK524237.1|FK524237
genomic: GCCGGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
EST: AGAGGATTTTCACTGGAAGAATTGAAG GCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGATEST: gi|18040171|gb|BM308465.1|BM308465
genomic: AGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
EST: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAG GCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGATEST: gi|12688119|gb|BG154455.1|BG154455
genomic: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
EST: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAG GCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGATEST: gi|208081632|gb|GD882060.1|GD882060
genomic: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
EST: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAG GCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGATEST: gi|208175833|gb|GD977242.1|GD977242
genomic: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
EST: CAACATAG-AAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAG GCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGATEST: gi|208135724|gb|GD936681.1|GD936681
genomic: CAACAT-GAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
EST: AGAGGATTTTCACTGGAAGAATTGAAG GCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGATEST: gi|26047262|gb|CA784114.1|CA784114
genomic: AGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
EST: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAG GCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGATEST: gi|151402405|gb|EV272218.1|EV272218
genomic: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
EST: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAG GCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGATEST: gi|17400476|gb|BM177258.1|BM177258
genomic: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
EST: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAG GCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
genomic: ACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgac ... tatatcctagGCTGCAGGAATTCCCAAGAAACTTGCTCCAACTATTGGGATTTCTGTTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCTACTGCTGGATCTCTCAGGCCTATTGTTCATGGCCAGACTCTGAAATACAACATGAAAGTCAGAGCCGGGAGAGGATTTTCACTGGAAGAATTGAAGgtaaaatgacttattctgaccccattcttgcaaaagcaactgttatgagttatgacttgctatggatcattcattggtggggtaatacaataggcttgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG