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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATGGTTAAGTCTTCTGATATGTGTACTACTATTACTGCAGACAGAAGGGGTTCCTGTGGGAATCACTTTTGTTGAAAATGCAGTGGCAAAAGGGGCTGgtgagaaatttctgctgtttctgctatgctcttcatctccttcaccacaattttcagtattgtttattgtagtttggaaattgatctatgtttaacatcttgttcag

Basic information

species Glycine max
transcript GLYMA16G17190.4
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192305159|gb|FG993939.1|FG993939
EST:     GGTTCCTGTGGGAATCACTTTTGTTGAAAATGCAGTGGCAAAAGGGGCTG                         TTTGTTTGGATGGGAGTCCTCCAGCTTACCACTTCCACAAGGGATCTGGAG
genomic: GGTTCCTGTGGGAATCACTTTTGTTGAAAATGCAGTGGCAAAAGGGGCTGgtgagaaatt ... tcttgttcagTTTGTTTGGATGGGAGTCCTCCAGCTTACCACTTCCACAAGGGATCTGGAG
EST: gi|6134368|gb|AW132761.1|AW132761
EST:     GTTCCTGTGGGGAATCACTTTTGTTGAAAATGCAGTGGCAAAAGGGGCTG                         TTTGTTTGGATGGGAGTCCTCCAGCTTACCACTTCCACAAGGGATCTGGAG
genomic: GTTCCTGT-GGGAATCACTTTTGTTGAAAATGCAGTGGCAAAAGGGGCTGgtgagaaatt ... tcttgttcagTTTGTTTGGATGGGAGTCCTCCAGCTTACCACTTCCACAAGGGATCTGGAG
EST: gi|7924546|gb|AW830572.1|AW830572
EST:     GGTTCCTGTGGGAATCACTTTTGTTGAAAATGCAGTGGCAAAAGGGGCTG                         TTTGTTTGGATGGGAGTCCTCCAGCTTACCACTTCCACAAGGGATCTGGAG
genomic: GGTTCCTGTGGGAATCACTTTTGTTGAAAATGCAGTGGCAAAAGGGGCTGgtgagaaatt ... tcttgttcagTTTGTTTGGATGGGAGTCCTCCAGCTTACCACTTCCACAAGGGATCTGGAG
EST: gi|6567013|gb|AW234640.1|AW234640
EST:     GGTTCCTGTGGGAATCACTTTTGTTGAAAATGCAGTGGCAAAAGGGGCTG                         TTTGTTTGGATGGGAGTCCTCCAGCTTACCACTTCCACAAGGGATCTGGAG
genomic: GGTTCCTGTGGGAATCACTTTTGTTGAAAATGCAGTGGCAAAAGGGGCTGgtgagaaatt ... tcttgttcagTTTGTTTGGATGGGAGTCCTCCAGCTTACCACTTCCACAAGGGATCTGGAG
EST: gi|27425520|gb|CA937040.1|CA937040
EST:     GGTTCCTGTGGGAATCACTTTTGTTGAAAATGCAGTGGCAAAAGGGGCTG                         TTTGTTTGGATGGGAGTCCTCCAGCTTACCACTTCCACAAGGGATCTGGAG
genomic: GGTTCCTGTGGGAATCACTTTTGTTGAAAATGCAGTGGCAAAAGGGGCTGgtgagaaatt ... tcttgttcagTTTGTTTGGATGGGAGTCCTCCAGCTTACCACTTCCACAAGGGATCTGGAG
EST: gi|37995287|gb|CF806876.1|CF806876
EST:     GGTTCCTGTGGGAATCACTTTTGTTGAAAATGCAGTGGCAAAAGGGGCTG                         TTTGTTTGGATGGGAGTCCTCCAGCTTACCACTTCCACAAGGGATCTGGAG
genomic: GGTTCCTGTGGGAATCACTTTTGTTGAAAATGCAGTGGCAAAAGGGGCTGgtgagaaatt ... tcttgttcagTTTGTTTGGATGGGAGTCCTCCAGCTTACCACTTCCACAAGGGATCTGGAG
EST: gi|4314114|gb|AI461233.1|AI461233
EST:     GGTTCCTGTGGGAATCACTTTTGTTGAAAATGCAGTGGCAAAAGGGGCTG                         TTTGTTTGGATGGGAGTCCTCCAGCTTACCACTTCCACAAGGGATCTGGAG
genomic: GGTTCCTGTGGGAATCACTTTTGTTGAAAATGCAGTGGCAAAAGGGGCTGgtgagaaatt ... tcttgttcagTTTGTTTGGATGGGAGTCCTCCAGCTTACCACTTCCACAAGGGATCTGGAG
EST: gi|213594458|gb|DB970024.1|DB970024
EST:     GGTTCCTGTGGGAATCACTTTTGTTGAAAATGCAGTGGCAAAAGGGGCTG                         TTTGTTTGGATGGGAGTCCTCCAGCTTACCACTTCCACAAGGGATCTGGAG
genomic: GGTTCCTGTGGGAATCACTTTTGTTGAAAATGCAGTGGCAAAAGGGGCTGgtgagaaatt ... tcttgttcagTTTGTTTGGATGGGAGTCCTCCAGCTTACCACTTCCACAAGGGATCTGGAG
EST: gi|8283603|gb|BE021162.1|BE021162
EST:     GGTTCCTGTGGGAATCACTTTTGTTGAAAATGCAGTGGCAAAAGGGGCTG                         TTTGTTTGGATGGGAGTCCTCCAGCTTACCACTTCCACAAGGGATCTGGAG
genomic: GGTTCCTGTGGGAATCACTTTTGTTGAAAATGCAGTGGCAAAAGGGGCTGgtgagaaatt ... tcttgttcagTTTGTTTGGATGGGAGTCCTCCAGCTTACCACTTCCACAAGGGATCTGGAG