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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATGGTTAAATCTTCTAGTTTGTGTACTGCTATTGCTTAAGGCAGAAGGATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaattttagttgtgatattatgcaactttaattctccagtgttactatttttagtaatatttatatgatagatgataaattgaagcttaacgtgtcatgcag

Basic information

species Glycine max
transcript GLYMA16G17150.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298171364|gb|HO016396.1|HO016396
EST:     ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTG                         TTTGTTTGGATGGAAGCTCCCCAGCATACCACTTTGACAACGGATTTGAAG
genomic: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: gi|9986447|gb|BE660555.1|BE660555
EST:     ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTG                         TTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
genomic: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: gi|23731779|gb|BU764032.1|BU764032
EST:     ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTG                         TTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
genomic: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: gi|6455064|gb|AW185747.1|AW185747
EST:     ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTG                         TTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
genomic: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: gi|298173936|gb|HO017272.1|HO017272
EST:     ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGGATCAAAAGGAGCTG                         TTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
genomic: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: gi|9986449|gb|BE660557.1|BE660557
EST:     ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTG                         TTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
genomic: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: gi|5770415|gb|AI973589.1|AI973589
EST:     CAGAATCAAAAGGAGCTG                         TTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
genomic: CAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: gi|9986446|gb|BE660554.1|BE660554
EST:     ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTG                         TTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
genomic: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: gi|6667580|gb|AW279031.1|AW279031
EST:     ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTG                         TTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
genomic: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: gi|192301230|gb|FG990180.1|FG990180
EST:     ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTG                         TTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
genomic: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: gi|6455714|gb|AW186397.1|AW186397
EST:     ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTG                         TTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
genomic: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: gi|163921421|gb|EH038959.1|EH038959
EST:     ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTG                         TTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
genomic: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: gi|7588006|gb|AW703811.1|AW703811
EST:     ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTG                         TTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
genomic: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: gi|151395749|gb|EV265626.1|EV265626
EST:     ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTG                         TTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
genomic: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: gi|298199322|gb|HO042685.1|HO042685
EST:     ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTG                         TTTGTTTGGATGGAAGCCCCCCAGCACACCACTTTGACAACGGATTTGAAG
genomic: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: gi|6341667|gb|AW164491.1|AW164491
EST:     ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTG                         TTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
genomic: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: gi|7589352|gb|AW705128.1|AW705128
EST:     ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTG                         TTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
genomic: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: gi|9986448|gb|BE660556.1|BE660556
EST:     ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTG                         TTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
genomic: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: gi|9986450|gb|BE660558.1|BE660558
EST:     ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTG                         TTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
genomic: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: gi|5753593|gb|AI960880.1|AI960880
EST:     CAGAATCAAAAGGAGCTG                         TTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
genomic: CAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: gi|6667990|gb|AW279441.1|AW279441
EST:     ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTG                         TTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
genomic: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: gi|9899585|gb|BE608553.1|BE608553
EST:     ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTG                         TTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
genomic: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: gi|7589167|gb|AW704947.1|AW704947
EST:     ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTG                         TTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
genomic: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: gi|6070716|gb|AW100103.1|AW100103
EST:     ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTG                         TTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
genomic: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: gi|6454121|gb|AW184869.1|AW184869
EST:     ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTG                         TTTGTTTGGATGGAAGCCCCCCAGCATACCACTGTGACAACGGATTTGAAG
genomic: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: gi|9986445|gb|BE660553.1|BE660553
EST:     ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTG                         TTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
genomic: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: gi|6724637|gb|AW309092.1|AW309092
EST:     ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTG                         TTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
genomic: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: gi|5753417|gb|AI960704.1|AI960704
EST:     ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTG                         TTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
genomic: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAATGGTTAAATCTTCTAGTTTGTGTACTGCTATTGCTTAAGGCAGAAGGATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaattttagttgtgatattatgcaactttaattctccagtgttactatttttagtaatatttatatgatagatgataaattgaagcttaacgtgtcatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT