1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AAATGGTTAAATCTTCTAGTTTGTGTACTGCTATTGCTTAAGGCAGAAGGATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaattttagttgtgatattatgcaactttaattctccagtgttactatttttagtaatatttatatgatagatgataaattgaagcttaacgtgtcatgcag
species | Glycine max |
transcript | GLYMA16G17150.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTG TTTGTTTGGATGGAAGCTCCCCAGCATACCACTTTGACAACGGATTTGAAGEST: gi|9986447|gb|BE660555.1|BE660555
genomic: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTG TTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAGEST: gi|23731779|gb|BU764032.1|BU764032
genomic: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTG TTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAGEST: gi|6455064|gb|AW185747.1|AW185747
genomic: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTG TTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAGEST: gi|298173936|gb|HO017272.1|HO017272
genomic: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGGATCAAAAGGAGCTG TTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAGEST: gi|9986449|gb|BE660557.1|BE660557
genomic: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTG TTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAGEST: gi|5770415|gb|AI973589.1|AI973589
genomic: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: CAGAATCAAAAGGAGCTG TTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAGEST: gi|9986446|gb|BE660554.1|BE660554
genomic: CAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTG TTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAGEST: gi|6667580|gb|AW279031.1|AW279031
genomic: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTG TTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAGEST: gi|192301230|gb|FG990180.1|FG990180
genomic: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTG TTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAGEST: gi|6455714|gb|AW186397.1|AW186397
genomic: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTG TTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAGEST: gi|163921421|gb|EH038959.1|EH038959
genomic: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTG TTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAGEST: gi|7588006|gb|AW703811.1|AW703811
genomic: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTG TTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAGEST: gi|151395749|gb|EV265626.1|EV265626
genomic: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTG TTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAGEST: gi|298199322|gb|HO042685.1|HO042685
genomic: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTG TTTGTTTGGATGGAAGCCCCCCAGCACACCACTTTGACAACGGATTTGAAGEST: gi|6341667|gb|AW164491.1|AW164491
genomic: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTG TTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAGEST: gi|7589352|gb|AW705128.1|AW705128
genomic: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTG TTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAGEST: gi|9986448|gb|BE660556.1|BE660556
genomic: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTG TTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAGEST: gi|9986450|gb|BE660558.1|BE660558
genomic: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTG TTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAGEST: gi|5753593|gb|AI960880.1|AI960880
genomic: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: CAGAATCAAAAGGAGCTG TTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAGEST: gi|6667990|gb|AW279441.1|AW279441
genomic: CAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTG TTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAGEST: gi|9899585|gb|BE608553.1|BE608553
genomic: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTG TTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAGEST: gi|7589167|gb|AW704947.1|AW704947
genomic: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTG TTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAGEST: gi|6070716|gb|AW100103.1|AW100103
genomic: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTG TTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAGEST: gi|6454121|gb|AW184869.1|AW184869
genomic: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTG TTTGTTTGGATGGAAGCCCCCCAGCATACCACTGTGACAACGGATTTGAAGEST: gi|9986445|gb|BE660553.1|BE660553
genomic: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTG TTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAGEST: gi|6724637|gb|AW309092.1|AW309092
genomic: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTG TTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAGEST: gi|5753417|gb|AI960704.1|AI960704
genomic: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
EST: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTG TTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
genomic: ATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaatt ... tgtcatgcagTTTGTTTGGATGGAAGCCCCCCAGCATACCACTTTGACAACGGATTTGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATGGTTAAATCTTCTAGTTTGTGTACTGCTATTGCTTAAGGCAGAAGGATCTCTTGTTCCATTGACTTTGGTGAAGAATGCAGAATCAAAAGGAGCTGgtgagaaattttagttgtgatattatgcaactttaattctccagtgttactatttttagtaatatttatatgatagatgataaattgaagcttaacgtgtcatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT