Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGGACTATGCATTCGAATTCATCATTCAAAATGGAGGCATTGACACAGACAAAGATTACCCATACCGTGGCTTTGATGGCATCTGTGATCCAACTAAGgtcactataccaatctttgaaacaagaaagaaaaaaaattaaccttgcctgatactagtatgttattaaacttaacatttgatttgtttctaatgatttgagtggctaatacttctgcag

Basic information

species Glycine max
transcript GLYMA16G16290.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G16290.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S369_30V6.2 (Physcomitrella patens), 5'ss of exon 2
TATGGACTATGCATTCGAATTCATCATTCAAAATGGAGGCATTGACACAGACAAAGATTACCCATACCGTGGCTTTGATGGCATCTGTGATCCAACTAAGgtcactataccaatctttgaaacaagaaagaaaaaaaattaaccttgcctgatactagtatgttattaaacttaacatttgatttgtttctaatgatttgagtggctaatacttctgcag
 ||||| ||||| ||||| ||||| ||||||||||||||||||||||| || ||||| || || |||   || || |||||   ||| ||    | |||||| |  | |    |   |  ||              |||||   | ||   |  |   | ||| ||| || |   | |  |       |||||  |      | |  | |   |  ||||
CATGGATTATGCCTTCGATTTCATTATTCAAAATGGAGGCATTGACACTGAGAAAGACTATCCTTACAAAGGTTTCGATGGTCGCTGCGACAACAGTAAGgt-agaacatt--ttccttgaattcctttttgttgcaattagattcgct--acccccctttgt-attgaagtggtcgt--ggcca---tctaactaagcagattgacattgtatgagcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298174395|gb|HO017731.1|HO017731
EST:     ACAAAGATTACCCATACCGTGGCTTTGATGGCATCTGTGATCCAACTAAG                         AAAAATGCAAAGGTTGTGAACATTGATGGGTTCGAGGATGTTCCACCGTAT
genomic: ACAAAGATTACCCATACCGTGGCTTTGATGGCATCTGTGATCCAACTAAGgtcactatac ... acttctgcagAAAAATGCAAAGGTTGTGAACATTGATGGGTTCGAGGATGTTCCACCGTAT
EST: gi|6481416|gb|AW200687.1|AW200687
EST:     ACAAAGATTACCCATACCGTGGCTTTGATGGCATCTGTGATCCAACTAAG                         AAAAATGCAAAGGTTGTGAACATTGATGGGTTCGAGGATGTTCCACCGTAT
genomic: ACAAAGATTACCCATACCGTGGCTTTGATGGCATCTGTGATCCAACTAAGgtcactatac ... acttctgcagAAAAATGCAAAGGTTGTGAACATTGATGGGTTCGAGGATGTTCCACCGTAT
EST: gi|16348173|gb|BI973768.1|BI973768
EST:     ACAAAGATTACCCATACCGTGGCTTTGATGGCATCTGTGATCCAACTAAG                         AAAAATGCAAAGGCGGTGAACATTGATGGGTACGAGGATGTTCCACCGTAT
genomic: ACAAAGATTACCCATACCGTGGCTTTGATGGCATCTGTGATCCAACTAAGgtcactatac ... acttctgcagAAAAATGCAAAGGTTGTGAACATTGATGGGTTCGAGGATGTTCCACCGTAT
EST: gi|22928301|gb|BU545440.1|BU545440
EST:     GATGGCATCTGTGATCCAACTAAG                         AAAAATGCAAAGGTTGTGAACATTGATGGGTTCGAGGATGTTCCACCGTAT
genomic: GATGGCATCTGTGATCCAACTAAGgtcactatac ... acttctgcagAAAAATGCAAAGGTTGTGAACATTGATGGGTTCGAGGATGTTCCACCGTAT