1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CCACAAGACAAGACTACATATTGGGCAATTGGTAAAGGATACATCAGCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAATgtaagtttgaaactttatcttatgttttactgcatctgcatgtgcaaatcagtttgtttgaatggtctatgtctcagtattttgtgatcaacttccaaaa...
species | Glycine max |
transcript | GLYMA16G13410.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CAGCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAAT GCAAGCAAGAAGATAGCAGATGCTAAACTTGCGAAAGATTTTACAAGGCAGEST: gi|254328508|gb|GR835473.1|GR835473
genomic: CAGCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAATgtaagtttga ... atttttgcagGCAAGCAAGAAGATAGCAGATGCTAAACTTGCGAAAGATTTT-CA-GGCAG
EST: CAGCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAAT GCAAGCAAGAAGATAGCAGATGCTAAACTTGCGAAAGATTTTCAGGCAGTGEST: gi|254328051|gb|GR835016.1|GR835016
genomic: CAGCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAATgtaagtttga ... atttttgcagGCAAGCAAGAAGATAGCAGATGCTAAACTTGCGAAAGATTTTCAGGCAGTG
EST: CAGCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAAT GCAAGCAAGAAGATAGCAGATGCTAAACTTGCGAAAGATTTTCAGGCAGTGEST: gi|7795796|gb|AW781193.1|AW781193
genomic: CAGCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAATgtaagtttga ... atttttgcagGCAAGCAAGAAGATAGCAGATGCTAAACTTGCGAAAGATTTTCAGGCAGTG
EST: CAGCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAAT GCAAGCAAGAAGATAGCAGATGCTAAACTTGCGAAAGATTTTCAGGCAGTG
genomic: CAGCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAATgtaagtttga ... atttttgcagGCAAGCAAGAAGATAGCAGATGCTAAACTTGCGAAAGATTTTCAGGCAGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCACAAGACAAGACTACATATTGGGCAATTGGTAAAGGATACATCAGCTAAACTTAAGCAAGCCAGTGACATTGATCACCATGCTGAAGTTAATgtaagtttgaaactttatcttatgttttactgcatctgcatgtgcaaatcagtttgtttgaatggtctatgtctcagtattttgtgatcaacttccaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG