Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAGTGCTGGATGGTGAGGAAGAGGAAGATGAGCCGGTTTTTGTTCTAACTGACGAATGGAGGGAATTCTTTGCACAATCTGAAGCTAGGAGAAAACTAGgtagccaatctatccttagctctttctcctatacataaatagattactaatgcagtttatgtctattaatgtgtctgagtatttgttcttctgaattctt...

Basic information

species Glycine max
transcript GLYMA16G11160.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7925426|gb|AW831452.1|AW831452
EST:     TGACGAATGGAGGGAATTCTTTGCACAATCTGAAGCTAGGAGAAAACTAG                         AAAAGAAGCAGGGC
genomic: TGACGAATGGAGGGAATTCTTTGCACAATCTGAAGCTAGGAGAAAACTAGgtagccaatc ... tgacatacagAAAAGAAGCAGGGC
EST: gi|16344435|gb|BI970030.1|BI970030
EST:     TGACGAATGGAGGGAATTCTTTGCACAATCTGAAGCTAGGAGAAAACTAG                         AAAAGAAGCAGGGCAAGAAGGGAAAGAAGTGAATATAGTGAGAAACGTTTG
genomic: TGACGAATGGAGGGAATTCTTTGCACAATCTGAAGCTAGGAGAAAACTAGgtagccaatc ... tgacatacagAAAAGAAGCAGGGCAAGAAGGGAAAGAAGTGAATATAGTGAGAAACGTTTG
EST: gi|16344362|gb|BI969957.1|BI969957
EST:     TGACGAATGGAGGGAATTCTTTGCACAATCTGAAGCTAGGAGAAAACTAG                         AAAAGAAGCAGGGCAAGAAGGGAAAGAAGTGAATATAGTGAGAAACGTTTG
genomic: TGACGAATGGAGGGAATTCTTTGCACAATCTGAAGCTAGGAGAAAACTAGgtagccaatc ... tgacatacagAAAAGAAGCAGGGCAAGAAGGGAAAGAAGTGAATATAGTGAGAAACGTTTG
EST: gi|207795521|gb|GD765846.1|GD765846
EST:     TTGCACAATCCGAAGCTAGGAGAAAACTAG                         AAAAGAAGCAGGGCAAGAAGGGAAAGAAGTGAATATAGTGAGAAACGTTTG
genomic: TTGCACAATCTGAAGCTAGGAGAAAACTAGgtagccaatc ... tgacatacagAAAAGAAGCAGGGCAAGAAGGGAAAGAAGTGAATATAGTGAGAAACGTTTG
EST: gi|193682286|gb|FK621340.1|FK621340
EST:     GCTAGGAGAAAACTAG                         AAAAGAAGCAGGGCAAGAAGGGAAAGAAGTGAATATAGTGAGAAACGTTTG
genomic: GCTAGGAGAAAACTAGgtagccaatc ... tgacatacagAAAAGAAGCAGGGCAAGAAGGGAAAGAAGTGAATATAGTGAGAAACGTTTG
EST: gi|193465013|gb|FK432814.1|FK432814
EST:     GCTAGGAGAAAACTAG                         AAAAGAAGCAGGGCAAGAAGGGAAAGAAGTGAATATAGTGAGAAACGTTTG
genomic: GCTAGGAGAAAACTAGgtagccaatc ... tgacatacagAAAAGAAGCAGGGCAAGAAGGGAAAGAAGTGAATATAGTGAGAAACGTTTG
EST: gi|298187645|gb|HO034794.1|HO034794
EST:     TGACGAATGGAGGGAATTCTTTGCACAATCTGAAGCTAGGAGAAAACTAG                         AAAAGAAGCAGGGCAAGAAGGGAAAGAAGTGAATATAGTGAGAAACGTTTG
genomic: TGACGAATGGAGGGAATTCTTTGCACAATCTGAAGCTAGGAGAAAACTAGgtagccaatc ... tgacatacagAAAAGAAGCAGGGCAAGAAGGGAAAGAAGTGAATATAGTGAGAAACGTTTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATAGTGCTGGATGGTGAGGAAGAGGAAGATGAGCCGGTTTTTGTTCTAACTGACGAATGGAGGGAATTCTTTGCACAATCTGAAGCTAGGAGAAAACTAGgtagccaatctatccttagctctttctcctatacataaatagattactaatgcagtttatgtctattaatgtgtctgagtatttgttcttctgaattctt

- - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctttctcc