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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTATGTTCAGATCAGGAGGGTTGCCCAAATCAACTACGGCAAGGAATATGGCATGCTCGTCGTCATTGTCGACGTCATTGACCATAACAGAgtaactcccccaccaccacccaagttcttacctttattcacatttacacacatccatttgcatgctttcttagaattagttcttgctttgttgataatcctaataatattag

Basic information

species Glycine max
transcript GLYMA16G08910.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G08910.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G028883_T01 (Zea mays), 5'ss of exon 2
-------AGGTATGTTCAGATCAGGAGGGTTGCCCAAATCAACTACGGCAAGGAATATGGCATGCTCGTCGTCATTGTCGACGTCATTGACCATAACAGAgtaactcccccaccaccacccaagttcttacctttattcacattta-cacacatccatttgcatgctttcttagaattagttcttgctttgt--tgataatcctaataatattag
       ||||  ||  ||||| || | || ||||   | |||||||||||||| ||||||   ||||||||||| ||||||||| | ||||| ||||| || | ||    |    ||    | ||||  | | |  || | |||    | | |    |    || |      |   | ||  | |||  ||  | |||| |             
GTTCAAGAGGTTCGTGGAGATCGGGCGAGTGGCCCTTGTAAACTACGGCAAGGAGTATGGCCGCCTCGTCGTCATCGTCGACGTCGTCGACCAGAACAGGgtgagtcaa--aatgtcagatcacttctctcttgtggtctcctttggttcgctttagctgaggtgttgataccggcctggtgttggctgcgtattcataaac-------------