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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCCTCACAAGGAGAAGATGAAGATTCTCAGGAATGAAAAACACAGGGGATACACCCCTGTTCTTGATGAGTTGCTTGATCCTGAAAACCAAGTGCATGgtatgtactatatacccttatgcctttgttgcatgtttacatagagtccaccatgctttctgattcttattattttgtgattctgaaccggtaaaaatac...

Basic information

species Glycine max
transcript GLYMA16G08470.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298183235|gb|HO028220.1|HO028220
EST:     ATACACCCCTGTTCTTGATGAGTTGCTTGATCCTGAAAACCAAGTACATG                         --G-AGACTACAAAGAGGGGTATTATATTGGAGTTGAAAAAGGTGAAGATG
genomic: ATACACCCCTGTTCTTGATGAGTTGCTTGATCCTGAAAACCAAGTGCATGgtatgtacta ... atgggttaagTAGGAGACTACAAAGAGGGGTATTATATTGGAGTTGAAAAAGGTGAAGATG
EST: gi|24135790|gb|BU926300.1|BU926300
EST:     ATACACCCCTGTTCTTGATGAGTTGCTTGATCCTGAAAACCAAGTACATG                         --G-AGACTACAAAGAGGGGTATTATATTGGAGTTGAAAAAGGTGAAGATG
genomic: ATACACCCCTGTTCTTGATGAGTTGCTTGATCCTGAAAACCAAGTGCATGgtatgtacta ... atgggttaagTAGGAGACTACAAAGAGGGGTATTATATTGGAGTTGAAAAAGGTGAAGATG
EST: gi|298181471|gb|HO022910.1|HO022910
EST:     ATACACCCCTGTTCTTGATGAGTTGCTTGATCCTGAAAACCAAGTACATG                         --G-AGACTACAAAGAGGGGTATTATATTGGAGTTGAAAAAGGTGAAGATG
genomic: ATACACCCCTGTTCTTGATGAGTTGCTTGATCCTGAAAACCAAGTGCATGgtatgtacta ... atgggttaagTAGGAGACTACAAAGAGGGGTATTATATTGGAGTTGAAAAAGGTGAAGATG
EST: gi|298166108|gb|HO009079.1|HO009079
EST:     ATACACCCCTGTTCTTGATGAGTTGCTTGATCCTGAAAACCAAGTACATG                         --G-AGACTACAAAGAGGGGTATTATATTGGAGTTGAAAA-GGTGAAGATG
genomic: ATACACCCCTGTTCTTGATGAGTTGCTTGATCCTGAAAACCAAGTGCATGgtatgtacta ... atgggttaagTAGGAGACTACAAAGAGGGGTATTATATTGGAGTTGAAAAAGGTGAAGATG
EST: gi|298179589|gb|HO026970.1|HO026970
EST:     ATACACCCCTGTTCTTGATGAGTTGCTTGATCCTGAAAACCAAGTACATG                         TAGGAGACTACAAAGAGGGGTATTATATTGGAGTTGAAAAAGGTGAAGATG
genomic: ATACACCCCTGTTCTTGATGAGTTGCTTGATCCTGAAAACCAAGTGCATGgtatgtacta ... atgggttaagTAGGAGACTACAAAGAGGGGTATTATATTGGAGTTGAAAAAGGTGAAGATG
EST: gi|19345789|gb|BM890669.1|BM890669
EST:     ATACACCCCTGTTCTTGATGAGTTGCTTGATCCTGAAAACCAAGTGCATG                         --G-AGACTACAAAGAGGGGTATTATATTGGAGTTGAAAAAGGTGAAGATG
genomic: ATACACCCCTGTTCTTGATGAGTTGCTTGATCCTGAAAACCAAGTGCATGgtatgtacta ... atgggttaagTAGGAGACTACAAAGAGGGGTATTATATTGGAGTTGAAAAAGGTGAAGATG
EST: gi|151412168|gb|EV281980.1|EV281980
EST:     ATACACCCCTGTTCTTGATGAGTTGCTTGATCCTGAAAACCAAGTGCATG                         TAGGAGACTACAAAGAGGGGTATTATATTGGAGTTGAAAAAGGTGAAGATG
genomic: ATACACCCCTGTTCTTGATGAGTTGCTTGATCCTGAAAACCAAGTGCATGgtatgtacta ... atgggttaagTAGGAGACTACAAAGAGGGGTATTATATTGGAGTTGAAAAAGGTGAAGATG
EST: gi|254340856|gb|GR854584.1|GR854584
EST:     ATACACCCCTGTTCTTGATGAGTTGCTTGATCCTGAAAACCAAGTGCATG                         --G-AGACTACAAAGAGGGGTATTATATTGGAGTTGAAAAAGGTGAAGATG
genomic: ATACACCCCTGTTCTTGATGAGTTGCTTGATCCTGAAAACCAAGTGCATGgtatgtacta ... atgggttaagTAGGAGACTACAAAGAGGGGTATTATATTGGAGTTGAAAAAGGTGAAGATG