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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATAAAGTATGAGAGTGTTATTCACGAGTTTGATCCTTATTTCAACTATAGAGTCACTCAGgtgagcactatttggaatggaaccattttgcacctattactacatgatggaggagtttctcatgctggttaatggctatacaaaaatggaatttcttcattgctgtaacatttgtttaattttactctgttaatctcaatgccataaaaattcacaaatgacgctactttgttggtttcag

Basic information

species Glycine max
transcript GLYMA16G08410.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G08410.1 (Glycine max), 5'ss of exon 2
lower sequence: AT5G19690.1 (Arabidopsis thaliana), 5'ss of exon 2
GTTATAAAGTATGAGAGTGTTATTCACGAGTTTGATCCTTATTTCAACTATAGAGTCACTCAGgtgagcactatttggaatggaaccattttgcacctatta--ctacatgatggaggagtttctcatgctggttaatggctatacaaaa--atggaatttcttcattgctgtaacatttgtttaattttactctgttaatctcaatgccataaaaattcacaaatgacgctactttgttggtttcag
|||||||||||||| ||||| ||||| |||||||||||||| ||||| |||||||||||||||||   | || |||           ||||      | |||  ||      |||  ||||| ||| |  |  ||  ||    | |      ||  ||||| ||  ||  |  |                                                                          
GTTATAAAGTATGAAAGTGTGATTCATGAGTTTGATCCTTACTTCAATTATAGAGTCACTCAGgttcactctcttt-------tcttatttccaggatgttaatcttagctttgggcgagtt-ctccttttaatttctgagattgcggtcctatttaatttgttgtttatttcag-------------------------------------------------------------------------

upper sequence: GLYMA16G08410.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv11s0016g03320.t01 (Vitis vinifera), 5'ss of exon 2
GTTATAAAGTATGAGAGTGTTATTCACGAGTTTGATCCTTATTTCAACTATAGAGTCACTCAGgtgag-----cactatttggaatggaaccattttgcacctattactacatgatggaggagtttctcatgctggttaatggctatacaaaaatggaatttcttcattgctgtaacatttgtttaattttactctgttaatctcaatgccataaaaattcacaaatgacgctactttgttggtttcag
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||     |  | ||||           ||||  | || ||  |  ||      ||  | | |  |    | |    |  | |  |||| |||| |                                                                                        
GTTATAAAGTATGAGAGTGTTATTCACGAGTTCGATCCTTATTTCAATTATAGAGTCACTCAGgtgaggttttccttgtttgttgatttttttttttaaatctctttgtttatatcaatggcctgtttggtttgagattggtgggagaagaaaaaggaactga--------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213612204|gb|DB956885.1|DB956885
EST:     AGAGTGTTATTCACGAGTTTGATCCTTATTTCAACTATAGAGTCACTCAG                         TTTTTGACAAAGAATGGGATATATGATTTCTGGAACTGGTTTGATGATCGA
genomic: AGAGTGTTATTCACGAGTTTGATCCTTATTTCAACTATAGAGTCACTCAGgtgagcacta ... ttggtttcagTTTTTGACAAAGAATGGGATATATGATTTCTGGAACTGGTTTGATGATCGA
EST: gi|213619661|gb|DB965607.1|DB965607
EST:     AGAGTGTTATTCACGAGTTTGATCCTTATTTCAACTATAGAGTCACTCAG                         TTTTTGACAAAGAATGGGATATATGATTTCTGGAACTGGTTTGATGATCGA
genomic: AGAGTGTTATTCACGAGTTTGATCCTTATTTCAACTATAGAGTCACTCAGgtgagcacta ... ttggtttcagTTTTTGACAAAGAATGGGATATATGATTTCTGGAACTGGTTTGATGATCGA
EST: gi|213588333|gb|DB967819.1|DB967819
EST:     AGAGTGTTATTCACGAGTTTGATCCTTATTTCAACTATAGAGTCACTCAG                         TTTTTGACAAAGAATGGGATATATGATTTCTGGAACTGGTTTGATGATCGA
genomic: AGAGTGTTATTCACGAGTTTGATCCTTATTTCAACTATAGAGTCACTCAGgtgagcacta ... ttggtttcagTTTTTGACAAAGAATGGGATATATGATTTCTGGAACTGGTTTGATGATCGA
EST: gi|209707445|gb|BW664904.1|BW664904
EST:     AGAGTGTTATTCACGAGTTTGATCCTTATTTCAACTATAGAGTCACTCAG                         TTTTTGACAAAGAATGGGATATATGATTTCTGGAACTGGTTTGATGATCGA
genomic: AGAGTGTTATTCACGAGTTTGATCCTTATTTCAACTATAGAGTCACTCAGgtgagcacta ... ttggtttcagTTTTTGACAAAGAATGGGATATATGATTTCTGGAACTGGTTTGATGATCGA