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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGCTATAATAGTGACCTTTGGTAACTACGCGTTCATGGATTTTATTCTTACGTGGGTTAAACAATTGACAGATCTGGGGGTTTCTAATTTCCTTGTTGgtgagcatctctgtttaagtcttgttttatctgtcatatatatgcagtagtgatgccttactagaaatgcatatccagtattttgttgtttgaattttgaaacctaacttttag

Basic information

species Glycine max
transcript GLYMA16G08350.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G08350.2 (Glycine max), 5'ss of exon 2
lower sequence: AT2G35610.1 (Arabidopsis thaliana), 5'ss of exon 2
AATGCTATAATAGTGACCTTTGGTAACTACGCGTTCATGGATTTTATTCTTACGTGGGTTAAACAATTGACAGATCTGGGGGTTTCTAATTTCCTTGTTGgtgagc-atctctgtttaagtcttgttttatctgtcatatatatgcagtagtgatgccttactagaaatgcatatccagtattttgttgtttgaattttgaaacctaacttttag
|||| ||| |||||||||||||| ||||| || || |||||||| ||| | || ||||||||||| ||||| ||| | |   | || ||| | ||||||||||||   || ||  | |  |||  || |   ||||   |  |     |     |   ||| ||    |   | |   |   ||| | |                          
AATGTTATTATAGTGACCTTTGGGAACTATGCTTTTATGGATTTCATTTTGACTTGGGTTAAACACTTGACTGATTTAGATCTCTCCAATATTCTTGTTGgtgagttgtcacttctaatatctatttctgattgtccatttcactggctttctgtaagttagtaactttatgt-tatggggctttatag--------------------------

upper sequence: GLYMA16G08350.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv02s0087g00740.t01 (Vitis vinifera), 5'ss of exon 3
AATGCTATAATAGTGACCTTTGGTAACTACGCGTTCATGGATTTTATTCTTACGTGGGTTAAACAATTGACAGATCTGGGGGTTTCTAATTTCCTTGTTGgtgagcatctctgtttaagtcttgttttatctgtcatatatatgcagtagtgatgccttactagaaatgcatatccagtattttgttgtttgaattttgaaacctaacttttag
||||  ||||||||||| |||||||| || || |||||||||||||| || || |||||||| || ||||| ||||||||  | || ||| | || ||||||  |  ||    ||     ||    |||  |     | |||| || |  |     | || |  |  |  || | ||  | | |   |   ||| |||||||      || |||
AATGTCATAATAGTGACGTTTGGTAATTATGCATTCATGGATTTTATCCTCACTTGGGTTAAGCACTTGACTGATCTGGGTATCTCCAATCTTCTCGTTGgtaggt-tcctcattcggacctgtaattacttccttgaaatat-cactttt--ccacatattctatgtcaattttcaagactgttaag---gaagtttgaaattgttgttatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213594699|gb|DB959810.1|DB959810
EST:     TACGTGGGTTAAACAATTGACAGATCTGGGGGTTTCTAATTTCCTTGTTG                         GTGCAATGGACA
genomic: TACGTGGGTTAAACAATTGACAGATCTGGGGGTTTCTAATTTCCTTGTTGgtgagcatct ... taacttttagGTGCAATGGACA
EST: gi|209727652|gb|BW652025.1|BW652025
EST:     TACGTGGGTTAAACAATTGACAGATCTGGGGGTTTCTAATTTCCTTGTTG                         GTGCAATGGACACCAAATTATTGGAGGCACTGTATTGGAAAGGGATACCAG
genomic: TACGTGGGTTAAACAATTGACAGATCTGGGGGTTTCTAATTTCCTTGTTGgtgagcatct ... taacttttagGTGCAATGGACACCAAATTATTGGAGGCACTGTATTGGAAAGGGATACCAG