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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACAAGGAGTCATCAATAATTCCTCTGCAAATTAAATACATCAGTTATCCTGAATGCAGCATTGACTTTCAAGATTACACTCCATGCACAGATCCAAGGgtaaaattactaataatagtctctttttttcttttttaatgttataggacttatagaagaatgtttccttattgattaagtatgcttaaattttcag

Basic information

species Glycine max
transcript GLYMA16G08120.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G08120.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv02s0033g01120.t01 (Vitis vinifera), 5'ss of exon 2
CCACAAGGAGTCATCAATAATTCCTCTGCAAATTAAATACATCAGTTATCCTGAATGCAGCATTGACTTTCAAGATTACACTCCATGCACAGATCCAAGGgtaa-aattactaataatagtctctttt---tttcttt------tttaatgttataggactta---tagaagaatgtttcct-tattgattaagtatgcttaaattttcag
 | |||||| || |||   | |||||| ||||||||||   |   ||  || |||||||| |  || | |||||| ||||||||||| |||||||||||||||  ||| |||  | || |  | |||    ||||| |      ||  ||  |  |||| ||    | |    |  || | |  ||||  |  ||||   ||   || |||
TCCCAAGGAATCGTCATCTAGTCCTCTCCAAATTAAATCAGTTGCTTTCCCAGAATGCAGTAGGGAATATCAAGACTACACTCCATGTACAGATCCAAGGgtatcaatcact--tcatcgcttatttcaagtttctatagaccattccattctccaggatttgctttggtgtcaaattgcttacattgtgtgtgtatctctattgttacag