Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATAACAACGTTATCCCCAATGGGCACTTCAGGAAACACTGGCAAAACTATGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaatttttaccaaaattattgctctttgttaacattgttgctataattaattaatcaatcagtttttaatacttgttatgcaagaaaagtgaatcaacttgagttattttgacacgggggtgacacattttcag

Basic information

species Glycine max
transcript GLYMA16G08090.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G08090.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os03g37970.1 (Oryza sativa), 5'ss of exon 2
CATAACAACGTTATCCCCAATGGGCACTTCAGGAAACACTGGCAAAACTATGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaatttttaccaaaattattgctctttgttaacattgttgc-tataattaattaatcaatcagtttttaatacttgttatgcaagaaaa-gtgaatcaacttgagttattttgacacgggggtgacacattttcag
|| |||||||||||||||||||| ||||||| ||| |||||||| |||||||| ||||| ||||| || || || || || |||   ||  | ||  | ||| |                 ||||  ||    |  | | ||  || | ||  | | ||||  |    || ||||   | |||  |||    ||||| || |   ||||| |                         
CACAACAACGTTATCCCCAATGGCCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATTGgtga-----------------gctccctggcctccctatcgcgcatgactatgttagcaatt-gccactagtactgcatgtgcttgaatttatgaattaaatacggttatctccttct-------------------

upper sequence: GLYMA16G08090.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os06g02510.3 (Oryza sativa), 5'ss of exon 2
CATAACAACGTTATCCCCAATGGGCACTTCAGGAAACACTGGCAAAACTATGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaatttttaccaaaattattgctctttgttaacattgttgctataattaattaatcaatcagtttttaatacttgttatgcaagaaaagtgaatcaacttgagttattttgacacgggggtgacacattttcag
|| |||||||| ||||| ||||||||||||| ||| |||||||| |||||||| ||||| ||||| || || || || || |||   ||  | ||  | |||||  |       |  | ||||  | | |  | ||  ||     ||| ||| |     | || ||    |||||| |    |      |      ||| |  |                               
CACAACAACGTCATCCCGAATGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgtaaagt--gattgatctcttgcgatctatcta-atgattatgtgaatgaatgagcatgttagcttcc--tacttgctcgtgagattgtgctgtgtaacatatgc------------------------------

upper sequence: GLYMA16G08090.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G409407_T01 (Zea mays), 5'ss of exon 2
CATAACAACGTTATCCCCAATGGGCACTTCAGGAAACACTGGCAAAACTATGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaatttttaccaaaattattgctctttgttaacattgttgctataattaattaatcaatcagtttttaatacttgttatgcaagaaaagtgaatcaacttgagttattttgacacgggggtgacacattttcag
|| ||||||||||||||||| |||||||||| ||| |||||||| |||||||| ||||| ||||| || || || || || |||   ||  | ||  | ||| |  | | |     |||   | || | | | | ||        |||   ||      |    ||  |    | ||| |  |   | |||    ||      |  | |                          
CACAACAACGTTATCCCCAACGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACATGGTTCAACCAGCCCGCCCGCAAGCAGAGGCGCCGCATCGgttagctcttctgtgctta---ccctctttcagccttcc------aatatgttgcgtgcttgaattcaagacttagttgtttacagatagtttgccatgccctgcaaat--------------------------

upper sequence: GLYMA16G08090.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G49010.5 (Arabidopsis thaliana), 5'ss of exon 2
CATAACAACGTTATCCCCAATGGGCACTTCAGGAAACACTGGCAAAACTATGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaatttttaccaaaattattgctctttgttaacattgttgctataattaattaatcaatcagtttttaatacttgttatgcaagaaaagtgaatcaacttgagttattttg-acacgggggtgacacattttcag
|| ||||| |||||||||||||| |||||||  || |||||||| || ||||| ||||| ||||| || || || ||  |||| ||||||||  |  | ||| | |  ||  ||             ||| |||| |  || |||  | |  |      |  ||||| | |  ||    | |||      ||  ||   ||  ||||| ||| |||| |                 
CACAACAATGTTATCCCCAATGGTCACTTCAAAAAGCACTGGCAGAATTATGTCAAGACATGGTTCAACCAGCCTGCCAGGAAAACCAGAAGAAGAATTGgttagtagtagtaa-------------tgtcaacacttctgatattgtcatgt------ttcgttttaagt--ttacactacaatctctttgggtcttattatgttatgttgtacacag-----------------

upper sequence: GLYMA16G08090.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv13s0047g01160.t01 (Vitis vinifera), 5'ss of exon 1
CATAACAACGTTATCCCCAATGGGCACTTCAGGAAACACTGGCAAAACTATGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaatttttaccaaaattattgctctttgttaacattgttgctataattaattaatcaatcagtttttaatacttgttatgcaagaaaagtgaatcaacttgagttattttgacacgggggtgacacattttcag
|||||||| ||| | || ||||||||||||| ||| |||||||| |||||||| ||||||||||| || ||||| || || || ||| ||||  |  | ||||     |       ||  |  |||  |||||| ||||   | |       |  ||| | ||||| || |||   || || |    ||  || |   | | |  | | | |                       
CATAACAATGTTGTGCCTAATGGGCACTTCAAGAAGCACTGGCAGAACTATGTCAAGACTTGGTTCAACCAACCTGCCCGCAAAACCCGAAGAAGAGTTGgtatgggctt------tttctcttctaggttaac-ttgtccattt------cttgtcattgagtttcta-tacc-attgtggatttgaatggagtaggcataaaatttgtgggtt--------------------

upper sequence: GLYMA16G08090.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv14s0006g00820.t01 (Vitis vinifera), 5'ss of exon 2
CATAACAACGTTATCCCCAATGGGCACTTCAGGAAACACTGGCAAAACTATGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaatt-tttaccaaaattattgct----ctttgttaacattgttgctataattaattaatcaatcagtttttaatac-ttgttatgcaagaaaagtgaatcaacttgagttattttgacacgggggtgacac-attttcag
|||||||| ||| | || ||||||||||||| |||||| ||||| || ||||| || ||||||||||| ||||| || || || || ||||| ||| ||||||  |  ||| | |  |||            ||||     |||     |||||| ||  |||    | || |  | | || | | ||  |   | |   |   || |  || | |||||| |   || | || || | |||
CATAACAATGTTGTGCCTAATGGGCACTTCAAGAAACATTGGCAGAATTATGTCAAAACTTGGTTTAACCAACCTGCTCGCAAAACAAGAAGACGTATAGgtagctacttaaccattttaaaatggaaatggtgtttttcctgtcttgctaattagttggtcataatgattctgtttcattatcaagcttgcttattctgt--gctcgcattttcttgacatgtctgttataccatctccag

upper sequence: GLYMA16G08090.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S126_52V6.1 (Physcomitrella patens), 5'ss of exon 2
CATAACAACGTTATCCCCAATGGGCACTTCAGGAAACACTGGCAAAACTATGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaatttttaccaaaattattgctctttgttaacattgttgctataattaattaatcaatcagtttttaatacttgttatgcaagaaaagtgaatcaacttgagttattttgacacgggggtgacacattttcag
|||||||| |||||||||||||| ||||||| |||  |||||||||||||||||| ||| |||||||| || || || || ||||  |||||  |    ||| |   |  |    |    || | || || ||  | ||| |       ||    ||  | | ||   | |   || ||||   || |   |    |||   ||    ||||                       
CATAACAATGTTATCCCCAATGGCCACTTCAAGAAGGACTGGCAAAACTATGTGAGGACCTGGTTTAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgttagcatccc----accgctg-tattggtgaatttggttac-------aaactgtccgttatttgagactctatgatatgtgtgacagcgg---taaccctaggacctttggtg--------------------

upper sequence: GLYMA16G08090.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S21_106V6.1 (Physcomitrella patens), 5'ss of exon 2
CATAACAACGTTATCCCCAATGGGCACTTCAGGAAACACTGGCAAAACTATGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaatttttaccaaaattattgctctttgttaacattgttgctata-attaattaatcaatcagtttttaatacttgttatgcaagaaaagtgaat-caacttgagttattttgacacgggggtgacacattttcag
||||||||||| || |||||||| ||||||| |||  ||||||| |||||||||| ||||||||| || || || ||||| ||||  |||||  |    ||| |  ||||      || ||   ||  ||     || |   |||  |||| ||||| |||    |  | | |        |  |  || | |  | ||||   ||                               
CATAACAACGTCATTCCCAATGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACTTGGTTCAACCAGCCCGCACGCAAGAAAAGAAGAAGAACGGgtgaggttta--ggctttgttatcctccgtc----ttttgattatggattagttaattaatttagtaatgaaatcccacgcgtgatcaatgcgtctacaaccatag-------------------------------

upper sequence: GLYMA16G08090.1 (Glycine max), 5'ss of exon 2
lower sequence: PP1S58_38V6.1 (Physcomitrella patens), 5'ss of exon 2
CATAACAACGTTATCCCCAATGGGCACTTCAGGAAACACTGGCAAAACTATGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaatttttaccaaaattattgctctttgttaacattgttgctataattaattaatcaatcagtttttaatacttgttatgcaagaaaagtgaatcaacttgagttattttgacacgggggtgacacattttcag
||||| || |||||||||||||| ||||||| |||  ||||||| |||||||||| ||| ||||| || || || || || ||||  |||||  |    ||||| | |        || | |    ||  | |  | |||| ||   ||   | || |   |  | | | |  || || |     | |  | || |    ||| ||                             
CATAATAATGTTATCCCCAATGGTCACTTCAAGAAGGACTGGCAGAACTATGTGAGGACCTGGTTCAACCAGCCCGCCCGCAAGAAAAGAAGAAGAACGGgtaactatagtt----ttttcggatcttcctgaattggttgttagctttcccttattacggaagtgtaatt--tttttgtctggaacatctcaaaccctatgaatt-----------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209722147|gb|BW659338.1|BW659338
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|57575842|gb|CX548813.1|CX548813
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|298197042|gb|HO041729.1|HO041729
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|298188363|gb|HO035056.1|HO035056
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAATGCTGTCAAGATTTTCCCAATGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|58025292|gb|CX712033.1|CX712033
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|298167525|gb|HO012788.1|HO012788
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|298191600|gb|HO039079.1|HO039079
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGCCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|14011765|gb|BG726687.1|BG726687
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|4289624|gb|AI441502.1|AI441502
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|42722905|gb|CK768804.1|CK768804
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|11688003|gb|BF595679.1|BF595679
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|192333930|gb|FK024743.1|FK024743
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|19936920|gb|BQ081066.1|BQ081066
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|298174143|gb|HO017479.1|HO017479
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|58018618|gb|CX705360.1|CX705360
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|192323376|gb|FK017077.1|FK017077
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|298182976|gb|HO028239.1|HO028239
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTCCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|192332197|gb|FK023846.1|FK023846
EST:     TGTGAAGACTTGGTTTAACCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|11411696|gb|BF423766.1|BF423766
EST:     GGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: GGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|22931546|gb|BU548685.1|BU548685
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCNGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|192311408|gb|FK003501.1|FK003501
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|298176355|gb|HO023056.1|HO023056
EST:     TGTGAAGACTTGGTTTAATCAACCAGTACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|7042773|gb|AW472667.1|AW472667
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAG-CGTTTAG                         CTCGGCAGAAGAAGGCTG-CAAGATTTTCCCAAGG
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGG
EST: gi|298180531|gb|HO025618.1|HO025618
EST:     TGTGAAGACTTGGTTTAACCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|209722700|gb|BW657954.1|BW657954
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|298177413|gb|HO027194.1|HO027194
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|192311409|gb|FK003502.1|FK003502
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|19934368|gb|BQ079398.1|BQ079398
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|298172584|gb|HO019624.1|HO019624
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGCCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|192297096|gb|FG988192.1|FG988192
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGACCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|192306965|gb|FK002659.1|FK002659
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|151409204|gb|EV279012.1|EV279012
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|33388395|gb|CA851602.1|CA851602
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCANGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|298170959|gb|HO015935.1|HO015935
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|17153985|gb|BM143918.1|BM143918
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|192332787|gb|FK026788.1|FK026788
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|151397933|gb|EV267806.1|EV267806
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|7232255|gb|AW567612.1|AW567612
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|298185148|gb|HO030361.1|HO030361
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGTGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCCC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|58018052|gb|CX704794.1|CX704794
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|16997107|gb|BM086479.1|BM086479
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGACCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|7924930|gb|AW830956.1|AW830956
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
EST: gi|192299168|gb|FG992899.1|FG992899
EST:     TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAG                         CTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC
genomic: TGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaattttta ... acattttcagCTCGGCAGAAGAAGGCTGTCAAGATTTTCCCAAGGCCTACTGCTGGACCTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CATAACAACGTTATCCCCAATGGGCACTTCAGGAAACACTGGCAAAACTATGTGAAGACTTGGTTTAATCAACCAGCACGGAAGACCAGAAGGCGTTTAGgtaatttttaccaaaattattgctctttgttaacattgttgctataattaattaatcaatcagtttttaatacttgttatgcaagaaaagtgaatcaacttgagttattttgacacgggggtgacacattttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA