1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GTACAAGTTAATTAAGGAAGTAGGTGATGGAACATTTGGGAGTGTTTGGAGAGCCATTAATAAGCAAAGTGGTGAAGTTgtaagtatgttttgggtcgaatgatacgtgaagttgcattttgtattttctctaatttgtcctaatattacag
species | Glycine max |
transcript | GLYMA16G08080.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAACATTTGGGAGTGTTTGGAGAGCCATTAATAAGCAAAGTGGTGAAGTT GTTGCAATCAAGAAAATGAAAAAGAAATATTACTCTTGGGAGGAGTGTGTAEST: gi|10237923|gb|BE806811.1|BE806811
genomic: GAACATTTGGGAGTGTTTGGAGAGCCATTAATAAGCAAAGTGGTGAAGTTgtaagtatgt ... aatattacagGTTGCAATCAAGAAAATGAAAAAGAAATATTACTCTTGGGAGGAGTGTGTA
EST: GGGAGTGTTTGGAGAGCCATTAATAAGCAAAGTGGTGAAGTT GTTGCAATCAAGAAAATGAAAAAGAAATATTACTCTTGGGAGGAGTGTGTAEST: gi|10237927|gb|BE806815.1|BE806815
genomic: GGGAGTGTTTGGAGAGCCATTAATAAGCAAAGTGGTGAAGTTgtaagtatgt ... aatattacagGTTGCAATCAAGAAAATGAAAAAGAAATATTACTCTTGGGAGGAGTGTGTA
EST: GGGAGTGTTTGGAGAGCCATTAATAAGCAAAGTGGTGAAGTT GTTGCAATCAAGAAAATGAAAAAGAAATATTACTCTTGGGAGGAGTGTGTAEST: gi|105632161|gb|DW246338.1|DW246338
genomic: GGGAGTGTTTGGAGAGCCATTAATAAGCAAAGTGGTGAAGTTgtaagtatgt ... aatattacagGTTGCAATCAAGAAAATGAAAAAGAAATATTACTCTTGGGAGGAGTGTGTA
EST: GAACATTTGGGAGTGTTTGGAGAGCCATTAATAAGCAAAGTGGTGAAGTT GTTGCAATCAAGAAAATGAAAAAGAAATATTACTCTTGGGAGGAGTGTGTAEST: gi|207698243|gb|GD679628.1|GD679628
genomic: GAACATTTGGGAGTGTTTGGAGAGCCATTAATAAGCAAAGTGGTGAAGTTgtaagtatgt ... aatattacagGTTGCAATCAAGAAAATGAAAAAGAAATATTACTCTTGGGAGGAGTGTGTA
EST: GAACATTTGGGAGTGTTTGGAGAGCCATTAATAAGCAAAGTGGTGAAGTT GTTGCAATCAAGAAAATGAAAAAGAAATATTACTCTTGGGAGGAGTGTGTA
genomic: GAACATTTGGGAGTGTTTGGAGAGCCATTAATAAGCAAAGTGGTGAAGTTgtaagtatgt ... aatattacagGTTGCAATCAAGAAAATGAAAAAGAAATATTACTCTTGGGAGGAGTGTGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACAAGTTAATTAAGGAAGTAGGTGATGGAACATTTGGGAGTGTTTGGAGAGCCATTAATAAGCAAAGTGGTGAAGTTgtaagtatgttttgggtcgaatgatacgtgaagttgcattttgtattttctctaatttgtcctaatattacag
- - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG