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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATCTGACCAAGCACAGTTCCTATCTCATATACAACGCTTCTCTCTACTTCAGCTCTGCTATTCAGAAGCAGTACTTTGAGAAATACGGTTATGGAGAGgttccttctctaactaacttcaatcacctctcattctcaattgaataacaacgacaccgtttcgtatattatgctgaactcttttttatctcatgtcatg...

Basic information

species Glycine max
transcript GLYMA16G07110.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192294741|gb|FG986590.1|FG986590
EST:     TCAGCTCTGCTATTCAGAAGCAGTACTTTGAGAAATACGGCTATGGAGAG                         ATGATACCTGTTGCTGCAAATGATGTTGCTTTCTCGATCCATGCTGTTCTA
genomic: TCAGCTCTGCTATTCAGAAGCAGTACTTTGAGAAATACGGTTATGGAGAGgttccttctc ... tttgtttcagATGATACCTGTTGCTGCAAATGATGTTGCTTTCTCGATCCATGCTGTTCTA
EST: gi|192313595|gb|FK005591.1|FK005591
EST:     TCAGCTCTGCTATTCAGAAGCAGTACTTTGAGAAATACGGTTATGGAGAG                         ATGATACCTGTTGCTGCAAATGATGTTGCTTTCTCGATCCATGCTGTTCTA
genomic: TCAGCTCTGCTATTCAGAAGCAGTACTTTGAGAAATACGGTTATGGAGAGgttccttctc ... tttgtttcagATGATACCTGTTGCTGCAAATGATGTTGCTTTCTCGATCCATGCTGTTCTA
EST: gi|298197220|gb|HO041963.1|HO041963
EST:     TCAGCTCTGCTATTCAGAAGCAGTACTTTGAGAAATACGGTTATGGAGAG                         ATGATACCTGTTGCTGCAAATGATGTTGCTTTCTCGATCCATGCTGTTCTA
genomic: TCAGCTCTGCTATTCAGAAGCAGTACTTTGAGAAATACGGTTATGGAGAGgttccttctc ... tttgtttcagATGATACCTGTTGCTGCAAATGATGTTGCTTTCTCGATCCATGCTGTTCTA
EST: gi|151401800|gb|EV271613.1|EV271613
EST:     TCAGCTCTGCTATTCAGAAGCAGTACTTTGAGAAATACGGTTATGGAGAG                         ATGATACCTGTTGCTGCAAATGATGTTGCTTTCTCGATCCATGCTGTTCTA
genomic: TCAGCTCTGCTATTCAGAAGCAGTACTTTGAGAAATACGGTTATGGAGAGgttccttctc ... tttgtttcagATGATACCTGTTGCTGCAAATGATGTTGCTTTCTCGATCCATGCTGTTCTA
EST: gi|192306919|gb|FG999952.1|FG999952
EST:     TCAGCTCTGCTATTCAGAAGCAGTACTTTGAGAAATACGGTTATGGAGAG                         ATGATACCTGTTGCTGCAAATGATGTTGCTTTCTCGATCCATGCTGTTCTA
genomic: TCAGCTCTGCTATTCAGAAGCAGTACTTTGAGAAATACGGTTATGGAGAGgttccttctc ... tttgtttcagATGATACCTGTTGCTGCAAATGATGTTGCTTTCTCGATCCATGCTGTTCTA
EST: gi|7327013|gb|AW620811.1|AW620811
EST:     TCAGCTCTGCTATTCAGAAGCAGTACTTTGAGAAATACGGTTATGGAGAG                         ATGATACCTGTTGCTGCAAATGATGTTGCTTTCTCGATCCATGCTGTTCTA
genomic: TCAGCTCTGCTATTCAGAAGCAGTACTTTGAGAAATACGGTTATGGAGAGgttccttctc ... tttgtttcagATGATACCTGTTGCTGCAAATGATGTTGCTTTCTCGATCCATGCTGTTCTA
EST: gi|192313596|gb|FK005592.1|FK005592
EST:     TCAGCTCTGCTATTCAGAAGCAGTACTTTGAGAAATACGGTTATGGAGAG                         ATGATACCTGTTGCTGCAAATGATGTTGCTTTCTCGATCCATGCTGTTCTA
genomic: TCAGCTCTGCTATTCAGAAGCAGTACTTTGAGAAATACGGTTATGGAGAGgttccttctc ... tttgtttcagATGATACCTGTTGCTGCAAATGATGTTGCTTTCTCGATCCATGCTGTTCTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAATCTGACCAAGCACAGTTCCTATCTCATATACAACGCTTCTCTCTACTTCAGCTCTGCTATTCAGAAGCAGTACTTTGAGAAATACGGTTATGGAGAGgttccttctctaactaacttcaatcacctctcattctcaattgaataacaacgacaccgtttcgtatattatgctgaactcttttttatctcatgtcatg

- - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA