1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
TGTGCCTGAAACTGGGTCACTCTCTATTGTGGTGCTTGGTGCTTCTGGTGATCTTGCTAAGAAGAAGACATTTCCTGCACTTTTCCACCTATACCTGCAGgtaaagcagaatcttggtggatcatgttgattagtgtgtgatgtagaacagttgtaaaaatgagaaatattaatgcagatgatcatgcaactaatgatgg...
species | Glycine max |
transcript | GLYMA16G06850.3 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCTTGCTAAGAAAGAAGACATTTCCTGCACTTTTCCACCTATACCTGCAG GGATTCTTACCACCAGATGAAGTTCATATTTTTGGCTATGCAAGGACAAAAEST: gi|213607767|gb|DB959106.1|DB959106
genomic: TCTTGCTAAG-AAGAAGACATTTCCTGCACTTTTCCACCTATACCTGCAGgtaaagcaga ... ttgtttgcagGGATTCTTACCACCAGATGAAGTTCATATTTTTGGCTATGCAAGGACAAAA
EST: ATCTTGCTAAGAAGAAGACATTTCCTGCACTTTTCCACCTATACCTGCAG GGATTCTTACCACCAGATGAAGTTCATATTTTTGGCTATGCAAGGACAAAAEST: gi|213608230|gb|DB970827.1|DB970827
genomic: ATCTTGCTAAGAAGAAGACATTTCCTGCACTTTTCCACCTATACCTGCAGgtaaagcaga ... ttgtttgcagGGATTCTTACCACCAGATGAAGTTCATATTTTTGGCTATGCAAGGACAAAA
EST: ATCTTGCTAAGAAGAAGACATTTCCTGCACTTTTCCACCTATACCTGCAG GGATTCTTACCACCAGATGAAGTTCATATTTTTGGCTATGCAAGGACAAAAEST: gi|19453077|gb|BM954487.1|BM954487
genomic: ATCTTGCTAAGAAGAAGACATTTCCTGCACTTTTCCACCTATACCTGCAGgtaaagcaga ... ttgtttgcagGGATTCTTACCACCAGATGAAGTTCATATTTTTGGCTATGCAAGGACAAAA
EST: ATCTTGCTAAGAAGAAGACATTTCCTGCACTTTTCCACCTATACCTGCAG GGATTCTTACCACCAGATGAAGTTCATATTTTTGGCTATGCAAGGACAAAAEST: gi|19268946|gb|BM885202.1|BM885202
genomic: ATCTTGCTAAGAAGAAGACATTTCCTGCACTTTTCCACCTATACCTGCAGgtaaagcaga ... ttgtttgcagGGATTCTTACCACCAGATGAAGTTCATATTTTTGGCTATGCAAGGACAAAA
EST: ATCTTGCTAAGAAGAAGACATTTCCTGCACTTTTCCACCTATACCTGCAG GGATTCTTACCACCAGATGAAGTTCATATTTTTGGCTATGCAAGGACAAAAEST: gi|9986040|gb|BE660148.1|BE660148
genomic: ATCTTGCTAAGAAGAAGACATTTCCTGCACTTTTCCACCTATACCTGCAGgtaaagcaga ... ttgtttgcagGGATTCTTACCACCAGATGAAGTTCATATTTTTGGCTATGCAAGGACAAAA
EST: ATCTTGCTAAGAAGAAGACATTTCCTGCACTTTTCCACCTATACCTGCAG GGATTCTTACCACCAGATGAAGTTCATATTTTTGGCTATGCAAGGACAAAAEST: gi|37995559|gb|CF807148.1|CF807148
genomic: ATCTTGCTAAGAAGAAGACATTTCCTGCACTTTTCCACCTATACCTGCAGgtaaagcaga ... ttgtttgcagGGATTCTTACCACCAGATGAAGTTCATATTTTTGGCTATGCAAGGACAAAA
EST: ATCTTGCTAAGAAGAAGACATTTCCTGCACTTTTCCACCTATACCTGCAG GGATTCTTACCACCAGATGAAGTTCATATTTTTGGCTATGCAAGGACAAAAEST: gi|15663680|gb|BI701051.1|BI701051
genomic: ATCTTGCTAAGAAGAAGACATTTCCTGCACTTTTCCACCTATACCTGCAGgtaaagcaga ... ttgtttgcagGGATTCTTACCACCAGATGAAGTTCATATTTTTGGCTATGCAAGGACAAAA
EST: ATCTTGCTAAGAAGAAGACATTTCCTGCACTTTTCCACCTATACCTGCAG GGATTCTTACCACCAGATGAAGTTCATATTTTTGGCTATGCAAGGACAAAA
genomic: ATCTTGCTAAGAAGAAGACATTTCCTGCACTTTTCCACCTATACCTGCAGgtaaagcaga ... ttgtttgcagGGATTCTTACCACCAGATGAAGTTCATATTTTTGGCTATGCAAGGACAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTGCCTGAAACTGGGTCACTCTCTATTGTGGTGCTTGGTGCTTCTGGTGATCTTGCTAAGAAGAAGACATTTCCTGCACTTTTCCACCTATACCTGCAGgtaaagcagaatcttggtggatcatgttgattagtgtgtgatgtagaacagttgtaaaaatgagaaatattaatgcagatgatcatgcaactaatgatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttggtgg