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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATTATGATCTTTGCCTCTGTTCACTTTGTACTGTCTCACCTGCCCAACTTCAACTCCATTTCTGGTGTATCTCTGGCAGCAGCAGTTATGTCCTTGAGgtacaagtcataaccttttagttatataggtttaattaaacttttggtcctcgttttattttcattccgcacatttagttcccttatttttttttcctac...

Basic information

species Glycine max
transcript GLYMA16G06750.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G06750.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv14s0171g00400.t01 (Vitis vinifera), 5'ss of exon 3
TCATTATGATCTTTGCCTCTGTTCACTTTGTACTGTCTCACCTGCCCAACTTCAACTCCATTTCTGGTGTATCTCTGGCAGCAGCAGTTATGTCCTTGAGgtacaagtcataaccttttagttatataggtttaattaaacttttggtcctcgttttattttcattccgcacatttagttcccttatttttttttcctac
|||| |||||||| ||||||||||| || || || || || || ||||||||||||||||| |||||||| ||||| ||||| ||||| ||||||||||||||| | |  | | |||                ||| |||||  || |||  || | |     |  |   | |  || ||    | |||| |  | |   
TCATCATGATCTTCGCCTCTGTTCATTTCGTGCTCTCCCATCTCCCCAACTTCAACTCCATCTCTGGTGTTTCTCTTGCAGCTGCAGTCATGTCCTTGAGgtaccaat--tgatcttaaga------------aatgaaactgctgatccaagtgtgagccaaacacaata-acatatttga--tgttttgtgatgcag-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|105632809|gb|DW246542.1|DW246542
EST:     TTCAACTCCATTTCTGGTGTATCTCTGGCAGCAGCAGTTATGTCCTTGAG                         TTACTCTACAATTGCCTGGGCAGCTTCTGCTCATAAGGGTGTTCAAGAGAA
genomic: TTCAACTCCATTTCTGGTGTATCTCTGGCAGCAGCAGTTATGTCCTTGAGgtacaagtca ... tgtcctacagTTACTCTACAATTGCCTGGGCAGCTTCTGCTCATAAGGGTGTTCAAGAGAA
EST: gi|254330083|gb|GR839636.1|GR839636
EST:     TTCAACTCCATTTCTGGTGTATCTCTGGCAGCAGCAGTTATGTCCTTGAG                         TTACTCTACAATTGCCTGGGCAGCTTCTGCTCATAAGGGTGTTCAAGAGAA
genomic: TTCAACTCCATTTCTGGTGTATCTCTGGCAGCAGCAGTTATGTCCTTGAGgtacaagtca ... tgtcctacagTTACTCTACAATTGCCTGGGCAGCTTCTGCTCATAAGGGTGTTCAAGAGAA
EST: gi|254343288|gb|GR856992.1|GR856992
EST:     TTCAACTCCATTTCTGGTGTATCTCTGGCAGCAGCAGTTATGTCCTTGAG                         TTACTCTACAATTGCCTGGGCAGCTTCTGCTCATAAGGGTGTTCAAGAGAA
genomic: TTCAACTCCATTTCTGGTGTATCTCTGGCAGCAGCAGTTATGTCCTTGAGgtacaagtca ... tgtcctacagTTACTCTACAATTGCCTGGGCAGCTTCTGCTCATAAGGGTGTTCAAGAGAA