Sequence
atgc intronic sequence ATGC exonic sequenceTCATCATGATCTTTGCTTCTGTTCATTTTGTCCTCTCTCACCTTCCCAACTTCAATGCCATCTCTGGAATCTCCTTGGCTGCAGCAATCATGTCTCTCAGgtaaattagtcaacaagttaacttaaccagccctcttctattaattttttttttaaggctcttctattaatttatatgtctttttcatttcttttatact...
Basic information
species | Glycine max |
transcript | GLYMA16G06740.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G06740.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ25874 (Selaginella moellendorffii), 5'ss of exon 3
TCATCATGATCTTTGCTTCTGTTCATTTTGTCCTCTCTCACCTTCCCAACTTCAATGCCATCTCTGGAATCTCCTTGGCTGCAGCAATCATGTCTCTCAGgtaa-attagtcaacaagttaacttaaccagccctctt--ctattaattttttttttaaggctcttctattaatttatatgtctttttcatttcttttatact
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GGATCCTCGTCTTTGCCTCAGTTCACTTCTTCTTGTCCCAGCTCCCAAACTTCAACTCCATCACCGGAGTCTCCTTGGCAGCAGCCGTCATGTCTCTCAGgtaagaagaagcaccaaaaatttttacgcaactttgccaactttttatctcttttccgcag------------------------------------------
upper sequence: GLYMA16G06740.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ10950 (Selaginella moellendorffii), 5'ss of exon 3
TCATCATGATCTTTGCTTCTGTTCATTTTGTCCTCTCTCACCTTCCCAACTTCAATGCCATCTCTGGAATCTCCTTGGCTGCAGCAATCATGTCTCTCAGgtaaattagtcaacaagttaacttaaccagccctcttctattaattttttttttaaggctcttctattaatttatatgtctttttcatttcttttatact
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GGATCCTCGTCTTTGCCTCGGTTCACTTCTTCTTGTCCCAGCTCCCAAACTTCAACTCCATCACCGGAGTCTCCTTGGCAGCAGCCGTCATGTCTCTCAGgtaagaagaagaactcaaaacttttacgcaactttgccaactttttatttcttttccgcag---------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151398976|gb|EV268847.1|EV268847EST: TTCAATGCCATCTCTGGAATCTCCTTGGCTGCAGCAATCATGTCTCTCAG CTACTCAACCATTGCATGGGTGGCTTCCGTGGACAAAAGAGTTCATAATCA
genomic: TTCAATGCCATCTCTGGAATCTCCTTGGCTGCAGCAATCATGTCTCTCAGgtaaattagt ... atatatgcagCTACTCAACCATTGCATGGGTGGCTTCCGTGGACAAAAGAGTTCATAATCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCATCATGATCTTTGCTTCTGTTCATTTTGTCCTCTCTCACCTTCCCAACTTCAATGCCATCTCTGGAATCTCCTTGGCTGCAGCAATCATGTCTCTCAGgtaaattagtcaacaagttaacttaaccagccctcttctattaattttttttttaaggctcttctattaatttatatgtctttttcatttcttttatact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccagccc