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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGGTAAAAAGAGTCAAAGATGGAGCTTCTCAGGACCAAATTTTGAATGAAACTAGATTGCAAAACTTGCAACGTGAACTTGTGAAGGACTTGCATGAGgtactcaaacttttatatcttaaattcaataaaatttcttattctgacaattgcatgtatgtggactgtaccttccaaactgtgatttttattattattg...

Basic information

species Glycine max
transcript GLYMA16G06580.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G06580.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G01780.1 (Arabidopsis thaliana), 5'ss of exon 2
TGGGGTAAAAAGAGTCAAAGATGGAGCTTCTCAGGACCAAATTTTGAATGAAACTAGATTGCAAAACTTGCAACGTGAACTTGTGAAGGACTTGCATGAGgtactcaaacttttatatcttaaattcaataaaatttcttattctgacaattgcatgtatgtggactgtaccttccaaactgtgatttt-tattattattg----------------------------------------------------------------------
 || || || ||  | |||||||| ||||| ||||| ||||| || ||||| ||  ||||||| |||||||||||||| ||||| |||||  | || |||||| | || | |    | || ||| | |  |  |   |||           |  | | || |    |   | |||  || |   ||||  || ||    ||                                                                      
AGGAGTGAAGAGGCTGAAAGATGGTGCTTCCCAGGATCAAATATTAAATGAGACACGATTGCAGAACTTGCAACGTGAGCTTGTTAAGGATCTCCAAGAGgtaattaagcct---cagctgaaagttagaagtaacccttggcaattttcctcgaagaattttagttaggctttcttaagtactatttaatactaaatgtggaggagaactattgcttgtggactgaaacgtggtcaatgtcttataaaaatcttgatctcaatttggcag

upper sequence: GLYMA16G06580.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv14s0171g00280.t01 (Vitis vinifera), 5'ss of exon 2
TGGGGTAAAAAGAGTCAAAGATGGAGCTTCTCAGGACCAAATTTTGAATGAAACTAGATTGCAAAACTTGCAACGTGAACTTGTGAAGGACTTGCATGAGgtactcaaacttttatatcttaaattcaataaaatttcttattctgacaattgcatgtatgtggactgtaccttccaaactgtgatttttattattattg----
 ||||| ||||| || |||||||| ||||||||||| |||||  ||||||| || || |||||||| |||||||||||||||||||| ||  | | ||||||    ||  | |  | |   | ||| || |  ||   |       | || |     | |    | || |  |     | |    |  | ||  ||| |     
AGGGGTGAAAAGGGTGAAAGATGGTGCTTCTCAGGATCAAATACTGAATGAGACAAGGTTGCAAAATTTGCAACGTGAACTTGTGAAAGATCTTCGTGAGgtttgtaagttctcct-tgaaagattaaacagtatacttc---tcaataactcagcatgttgacaatgcatttatgtgattaaattgataatctttagtaatcc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207778823|gb|GD753362.1|GD753362
EST:     AAACTAGATTGCAAAACTCGCAACGTGAACTTGTGAAGGACTTGCATGAG                         GTTAATACACCAAGAATGTTGGCCCGCCTTATTTGGGCTATTGCAGAGCAC
genomic: AAACTAGATTGCAAAACTTGCAACGTGAACTTGTGAAGGACTTGCATGAGgtactcaaac ... aacttaacagGTTAATACACCAAGAATGTTGGCCCGCCTTATTTGGGCTATTGCAGAGCAC