1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CCTGCTGCGGAGACACTCCCGCGCAATGAGGTGCTTGGAGGATACATCTTTGTCTGTAACAATGACACAATGCAGGAAGACTTGAAACGTCAGCTATTTGgtgtgtgcttattagttattaaatgacatctatttttctatcttgaatgttattaatcaaatacttcatgatgactgactctttcaatgttttttgatag
species | Glycine max |
transcript | GLYMA16G06100.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AAGACTTGAAACGTCAGCTATTTG GTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCTATAACACCTGGGTTACEST: gi|298190302|gb|HO032423.1|HO032423
genomic: AAGACTTGAAACGTCAGCTATTTGgtgtgtgctt ... tttttgatagGTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCTATAACACCTGGGTTAC
EST: TGTCTGTAACAATGACACAATGCAGGAAGACTTGAAACGTCGGCTATTTG GTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCTATAACACCTGGGTTACEST: gi|14011483|gb|BG726405.1|BG726405
genomic: TGTCTGTAACAATGACACAATGCAGGAAGACTTGAAACGTCAGCTATTTGgtgtgtgctt ... tttttgatagGTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCTATAACACCTGGGTTAC
EST: GAAGACTTGAAACGTCAGCTATTTG GTTTGCCTACAA-GTATCGAGATTCTGTTAGGGCTATAACACCTGGGTTACEST: gi|254341084|gb|GR854812.1|GR854812
genomic: GAAGACTTGAAACGTCAGCTATTTGgtgtgtgctt ... tttttgatagGTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCTATAACACCTGGGTTAC
EST: GTCAGCTATTTG GTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCTATAACACCTGGGTTACEST: gi|298170392|gb|HO019016.1|HO019016
genomic: GTCAGCTATTTGgtgtgtgctt ... tttttgatagGTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCTATAACACCTGGGTTAC
EST: TGTCTGTAACAATGACACAATGCATGAAGACTTGAAACGTCAGCTATTTG GTTTGCCTCCAAGGTATCGAGATTCTGTTAAGGCTATAACACCTGGGTTACEST: gi|4282613|gb|AI440553.1|AI440553
genomic: TGTCTGTAACAATGACACAATGCAGGAAGACTTGAAACGTCAGCTATTTGgtgtgtgctt ... tttttgatagGTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCTATAACACCTGGGTTAC
EST: TTGAAACGTCAGCTATTTG GTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCTATAACACCTGGGTTACEST: gi|254320127|gb|GR831043.1|GR831043
genomic: TTGAAACGTCAGCTATTTGgtgtgtgctt ... tttttgatagGTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCTATAACACCTGGGTTAC
EST: ATGCAGGAAGAC-TGAAACGTCAGCTATTTG GTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCTATAACA-CTGGGTTACEST: gi|13563366|gb|BG551595.1|BG551595
genomic: ATGCAGGAAGACTTGAAACGTCAGCTATTTGgtgtgtgctt ... tttttgatagGTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCTATAACACCTGGGTTAC
EST: AGGAAGACTTGAAACGTCAGCTATTTG GTTTGCCTCCAA-GTATCGAGATTCTGTTAGGGCTATAACACCTGGGTTACEST: gi|15000111|gb|BI320925.1|BI320925
genomic: AGGAAGACTTGAAACGTCAGCTATTTGgtgtgtgctt ... tttttgatagGTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCTATAACACCTGGGTTAC
EST: TGTCTGTAACAATGACACAATGCAGGAAGACTTGAAACGTCAGCTATTTG GTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCTATAACACCTGGGTTACEST: gi|208137092|gb|GD934536.1|GD934536
genomic: TGTCTGTAACAATGACACAATGCAGGAAGACTTGAAACGTCAGCTATTTGgtgtgtgctt ... tttttgatagGTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCTATAACACCTGGGTTAC
EST: AAGACTTGAAACGTCAGCTATTTG GTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCTATAACACCTGGGTTACEST: gi|192320601|gb|FK012011.1|FK012011
genomic: AAGACTTGAAACGTCAGCTATTTGgtgtgtgctt ... tttttgatagGTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCTATAACACCTGGGTTAC
EST: TCTGTAACAATGACACAATGCAGGAAGACTTGAAACGTCAGCTATTTG GTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCTATAACACCTGGGTTACEST: gi|254336107|gb|GR841432.1|GR841432
genomic: TCTGTAACAATGACACAATGCAGGAAGACTTGAAACGTCAGCTATTTGgtgtgtgctt ... tttttgatagGTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCTATAACACCTGGGTTAC
EST: GTAACAATGACACAATGCAGGAAGACTTGAAACGTCAGCTATTTG GTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCTATAACACCTGGGTTACEST: gi|192310236|gb|FK001934.1|FK001934
genomic: GTAACAATGACACAATGCAGGAAGACTTGAAACGTCAGCTATTTGgtgtgtgctt ... tttttgatagGTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCTATAACACCTGGGTTAC
EST: TGTCTGTAACAATGACACAATGCAGGAAGACTTGAAACGTCAGCTATTTG GTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCTATAACACCTGGGTTACEST: gi|192300399|gb|FG987886.1|FG987886
genomic: TGTCTGTAACAATGACACAATGCAGGAAGACTTGAAACGTCAGCTATTTGgtgtgtgctt ... tttttgatagGTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCTATAACACCTGGGTTAC
EST: TGTCTGTAACAATGACACAATGCAGGAAGACTTGAAACGTCAGCTATTTG GTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCTATAACACCTGGGTTACEST: gi|7232661|gb|AW568015.1|AW568015
genomic: TGTCTGTAACAATGACACAATGCAGGAAGACTTGAAACGTCAGCTATTTGgtgtgtgctt ... tttttgatagGTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCTATAACACCTGGGTTAC
EST: TGTCTGTAACAATGACACAATGCAGGAAGACTTGAAACGTCAGCTATTTG GTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCTATAACACCTGGGTTACEST: gi|7232641|gb|AW567995.1|AW567995
genomic: TGTCTGTAACAATGACACAATGCAGGAAGACTTGAAACGTCAGCTATTTGgtgtgtgctt ... tttttgatagGTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCTATAACACCTGGGTTAC
EST: TGTCTGTAACAATGACACAATGCAGGAAGACTTGAAACGTCAGCTATTTG GTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCTATAACACCTGGGTTAC
genomic: TGTCTGTAACAATGACACAATGCAGGAAGACTTGAAACGTCAGCTATTTGgtgtgtgctt ... tttttgatagGTTTGCCTCCAAGGTATCGAGATTCTGTTAGGGCTATAACACCTGGGTTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTGCTGCGGAGACACTCCCGCGCAATGAGGTGCTTGGAGGATACATCTTTGTCTGTAACAATGACACAATGCAGGAAGACTTGAAACGTCAGCTATTTGgtgtgtgcttattagttattaaatgacatctatttttctatcttgaatgttattaatcaaatacttcatgatgactgactctttcaatgttttttgatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT