Sequence
atgc intronic sequence ATGC exonic sequenceAGACTGCTGAGGCTGGTTTTGGGAATGAAATGTACAAGGTCTTAACTGCTGCAGCACTGAGTATAATGCTAAACCGGTCCTTGATCATTGGCCAAACCAGgcatattggttctttcccaagcctttctttttcatttttaagagctaaccttttttaattgatgcctgaaatttcttttagggttagtttggcggtatct...
Basic information
species | Glycine max |
transcript | GLYMA16G05700.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G05700.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os11g31110.1 (Oryza sativa), 5'ss of exon 2
AGACTGCTGAGGCTGGTTTTGGGAATGAAATGTACAAGGTCTTAACTGCTGCAGCACTGAGTATAATGCTAAACCGGTCCTTGATCATTGGCCAAACCAGgcatattggttctttcccaagccttt--ctttttcatttttaagagctaaccttttttaattgatgcctgaaatttctttt-agggttagtttggcggtatct
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AAGCCTCTGAAGCTGGGTTTGGTAATGAAATGTACAAGATATTAACAGCAGCAGCATTGAGTGTTATGTTAAACCGGTCTCTCATCATCGGGCAAACCAGgcatgtgcatttactctcaattatttatcttccttatctatcgggtttgaatacgttggacctatattttgactttcctgtgatgattatatatgagata---
upper sequence: GLYMA16G05700.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G015854_T01 (Zea mays), 5'ss of exon 2
AGACTGCTGAGGCTGGTTTTGGGAATGAAATGTACAAGGTCTTAACTGCTGCAGCACTGAGTATAATGCTAAACCGGTCCTTGATCATTGGCCAAACCAGgcatattggttctttcccaagcctttctttttcatttttaagagctaaccttt-tttaattgatgcctgaaatttcttttagggttagtttggcggtatct-
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AAGCATCTGAAGCTGGATTTGGCAATGAAATGTACAAGATCTTAACAGCGGGAGCCTTGAGTGTCATGTTAAACCGATCTTTGATCATCGGGCAAACAAGgcatatggatttacactctgctacttttcatgtgtatctttgatttgactattatgcgattggt--cggaagcattgagttctatgaatttgcttcttttcc
upper sequence: GLYMA16G05700.1 (Glycine max), 5'ss of exon 2
lower sequence: AT3G26950.1 (Arabidopsis thaliana), 5'ss of exon 2
AGACTGCTGAGGCTGGTTTTGGGAATGAAATGTACAAGGTCTTAACTGCTGCAGCACTGAGTATAATGCTAAACCGGTCCTTGATCATTGGCCAAACCAGgcatat--tggttctttcccaagcctttctttttcatttttaagagctaac-cttttttaattgatgcctgaaatttcttttagggtta-gtttggcggtatct--------------
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AAACAGCAGAAGCTGGATTTGGAAACGAAATGTATAAGATCTTAACATCAGCAGCATTGAGCATAATGTTAAACAGATCCTTGATCATTGGCCAGACCAGgcatatattggttctttctcaatcctttttctctatattaactgaactgttactatgcttgttgtagtttgtgttatttgtcttgtttatatttctttctttctctgggtatcctcag
upper sequence: GLYMA16G05700.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv14s0068g01550.t01 (Vitis vinifera), 5'ss of exon 2
AGACTGCTGAGGCTGGTTTTGGGAATGAAATGTACAAGGTCTTAACTGCTGCAGCACTGAGTATAATGCTAAACCGGTCCTTGATCATTGGCCAAACCAGgcatattggttctttcccaagcctttctttttcatttttaagagctaaccttttttaattgatgcctgaaatttcttttagggttagtttggcggtatct-
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AGGCATCAGAAGCAGGATTTGGCAATGAAATGTACAAGATCTTGACTGCTGCAGCATTGAGTATCATGTTGAACCGGTCCCTGATCATCGGGCAAACCAGgcatattggttctttctccagcctttctgttttatattcaaaa-ttggcttttctctataatgaatttagttataaacaaatgctagttttgtgtagccttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151413109|gb|EV282917.1|EV282917EST: GCAGCACTGAGTATAATGCTAAACCGGTCCTTGATCATTGGCCAAACCAG AGGCAAATATCCTTTTGGGGATTACATTTCTTATTCCAACTTTACCTTTAC
genomic: GCAGCACTGAGTATAATGCTAAACCGGTCCTTGATCATTGGCCAAACCAGgcatattggt ... tatatttcagAGGCAAATATCCTTTTGGGGATTACATTTCTTATTCCAACTTTACCTTTAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGACTGCTGAGGCTGGTTTTGGGAATGAAATGTACAAGGTCTTAACTGCTGCAGCACTGAGTATAATGCTAAACCGGTCCTTGATCATTGGCCAAACCAGgcatattggttctttcccaagcctttctttttcatttttaagagctaaccttttttaattgatgcctgaaatttcttttagggttagtttggcggtatct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctttccc