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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATTTTTTCTTCAAGGGAGGTTCATATTTGGACCAGATgtgagatcactggcactgacaattattcttatcgttgctcctgtcgcagttttctgtgtctttgttgccagaaaactgatggatgcattttctgaccact...

Basic information

species Glycine max
transcript GLYMA16G05670.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G05670.2 (Glycine max), 5'ss of exon 2
lower sequence: Vv14s0068g01530.t01 (Vitis vinifera), 5'ss of exon 2
-----------AAATTTTTTCTTCAAGGGA---GGTTCATATTTGGACCAG--ATgtgagatcactggcactgacaattattcttatcgttgctcctgtcgc-agttttctgt----gtcttt-gttgccagaaaactgatggatgcattttctgaccact---------------------------------------
              | |||  | | ||  |   | |  ||  ||   |     |  || ||  |     | ||    ||  | || |  |  ||  |   |  |||| ||  |     ||||| | ||  ||| |  | ||   |   | ||        |                                       
TACGGTTTTCTGTGTCTTTGTTGCCAGAAAACTGATGGATGATTATCCTCATCACTTGGGAATATCAATAATGGTTGTTGCTGTTGTATTCACTTTTTATgtgagttctcctttcctatctttagctgttagagattttatttttttctcttacatttttttgttccaattttgactggtgaaggtagcttccacaatgg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193348573|gb|FK315605.1|FK315605
EST:     AAATTTTTTCTTCAAGGGAGGTTCATATTTGGACCAGAT                         GTCTTAGTTCTTCTTTTGTTAACGTCTGGCCGAGATCCAGGCATAATTCCA
genomic: AAATTTTTTCTTCAAGGGAGGTTCATATTTGGACCAGATgtgagatcac ... atcttttcagGTCTTAGTTCTTCTTTTGTTAACGTCTGGCCGAGATCCAGGCATAATTCCA