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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCGAACTTAACATCCTTGAACTTGAGCTATGCAGCAGGCATTCAGGGTAGTGATCTGATAAAACTGATTCGTCACTGTGTGAAACTTCAGCGCTTATTGgtaaatctatcaaattcaaaactttttccttttatttgttaattcttatattggtgaatatcaataatttttagacttgtgcag

Basic information

species Glycine max
transcript GLYMA16G05500.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208137891|gb|GD933809.1|GD933809
EST:     GTGATCTGATAAAACTGATTCGTCACTGTGTGAAACTTCAGCGCTTATTG                         ATAATGGATTGCATTGGAGACAAAGGACTTGATGTTGTAGCTACTTCATGT
genomic: GTGATCTGATAAAACTGATTCGTCACTGTGTGAAACTTCAGCGCTTATTGgtaaatctat ... acttgtgcagATAATGGATTGCATTGGAGACAAAGGACTTGATGTTGTAGCTACTTCATGT
EST: gi|4289627|gb|AI437498.1|AI437498
EST:     GTGATCTGATAAAACTGATTCGTCACTGTGTGAAACTTCAGCGCTTATTG                         ATAATGGATTGCATTGGAGACAAAGGACTTGATGTTGTAGCTACTTCATGT
genomic: GTGATCTGATAAAACTGATTCGTCACTGTGTGAAACTTCAGCGCTTATTGgtaaatctat ... acttgtgcagATAATGGATTGCATTGGAGACAAAGGACTTGATGTTGTAGCTACTTCATGT
EST: gi|4291302|gb|AI437600.1|AI437600
EST:     TGANTCTGATAAAACTGATTCGTCACTGTGTGAAACTTCAGCGCTTATTG                         ATAATGGATTGCATTGGAGACAAAGGACTTGATGTTGTAGCTACTTCATGT
genomic: TGA-TCTGATAAAACTGATTCGTCACTGTGTGAAACTTCAGCGCTTATTGgtaaatctat ... acttgtgcagATAATGGATTGCATTGGAGACAAAGGACTTGATGTTGTAGCTACTTCATGT
EST: gi|10234040|gb|BE802928.1|BE802928
EST:     CTGATTCGTCACTGTGTGAAACTTCAGCGCTTATTG                         ATAATGGATTGCATTGGAGACAAAGGACTTGATGTTGTAGCTACTTCATGT
genomic: CTGATTCGTCACTGTGTGAAACTTCAGCGCTTATTGgtaaatctat ... acttgtgcagATAATGGATTGCATTGGAGACAAAGGACTTGATGTTGTAGCTACTTCATGT
EST: gi|151396546|gb|EV266423.1|EV266423
EST:     TGATAAAACTGATTCGTCACTGTGTGAAACTTCAGCGCTTATTG                         ATAATGGATTGCATTGGAGACAAAGGACTTGATGTTGTAGCTACTTCATGT
genomic: TGATAAAACTGATTCGTCACTGTGTGAAACTTCAGCGCTTATTGgtaaatctat ... acttgtgcagATAATGGATTGCATTGGAGACAAAGGACTTGATGTTGTAGCTACTTCATGT
EST: gi|7588270|gb|AW704069.1|AW704069
EST:     GTGATCTGATAAAACTGATTCGTCACTGTGTGAAACTTCAGCGCTTATTG                         ATAATGGATTGCATTGGAGACAAAGGACTTGATGTTGTAGCTACTTCATGT
genomic: GTGATCTGATAAAACTGATTCGTCACTGTGTGAAACTTCAGCGCTTATTGgtaaatctat ... acttgtgcagATAATGGATTGCATTGGAGACAAAGGACTTGATGTTGTAGCTACTTCATGT
EST: gi|15337674|gb|BI498330.1|BI498330
EST:     AACTGATTCGTCACTGTGTGAAACTTCAGCGCTTATTG                         ATAATGGATTGCATTGGAGACAAAGGACTTGATGTTGTAGCTACTTCATGT
genomic: AACTGATTCGTCACTGTGTGAAACTTCAGCGCTTATTGgtaaatctat ... acttgtgcagATAATGGATTGCATTGGAGACAAAGGACTTGATGTTGTAGCTACTTCATGT