Sequence
atgc intronic sequence ATGC exonic sequenceAACATAGTTCTGACCGGGCTGAGTTCTTGAAGCTCTCCAAGAGAATAGAGTACACAATTCGAGCTTGGTACCTTCTACAGTTTGAGGACTTGATGgtatcatctatttcttgatttttctgacataatcatagttacctttaggttattgtggagcttgattcctttaaactttcag
Basic information
species | Glycine max |
transcript | GLYMA16G05180.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G05180.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G527387_T01 (Zea mays), 5'ss of exon 2
AACATAGTTCTGACCGGGCTGAGTTCTTGAAGCTCTCCAAGAGAATAGAGTACACAATTCGAGCTTGGTACCTTCTACAGTTTGAGGACTTGATGgtat-catctatttcttgattt-ttctgacataatcatagttacctttaggttattgtggagcttgattcctttaaactttcag
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AGCGTGAGAACGACCGGACTGAGTTCATGAAGCTATGTAAGAGGGTGGAGTACACAATCCGCGCTTGGTACCTTCTGCAGTTTGATGATCTCATGgtttgtgcctattcttctcttcattgttttatagtccaagttag--tcaagtttct-tggttttttgtgctatggtgcag----
upper sequence: GLYMA16G05180.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv14s0068g01000.t01 (Vitis vinifera), 5'ss of exon 2
AACATAGTTCTGACCGGGCTGAGTTCTTGAAGCTCTCCAAGAGAATAGAGTACACAATTCGAGCTTGGTACCTTCTACAGTTTGAGGACTTGATGgtatcatct----atttcttgatttttctgacataatcatagt-tacctttaggttattgtggagcttgattcctttaaact--ttcag----------------------------
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AACATAGTTCTGACCGTGCCGAGTTTTTAAAGCTGTGCAAGAGAGTTGAATACACAATACGAGCTTGGTATCTTCTACAGTTTGAGGATCTGATGgtattttattggagactcacgcttcttttca-gtattcataatctgatactatgctgtcctgttatctgtctcctgctcattgctttaatctaaattcaacatatattgttttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209700073|gb|BW656229.1|BW656229EST: TAGAGTACACAATTCGAGCTTGGTACCTTCTACAGTTTGAGGACTTGATG CAACTTTACTCCCTCTTTGATCCTGTACACGGGGCACAAAAGTTGGAACAG
genomic: TAGAGTACACAATTCGAGCTTGGTACCTTCTACAGTTTGAGGACTTGATGgtatcatcta ... aaactttcagCAACTTTACTCCCTCTTTGATCCTGTACACGGGGCACAAAAGTTGGAACAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AACATAGTTCTGACCGGGCTGAGTTCTTGAAGCTCTCCAAGAGAATAGAGTACACAATTCGAGCTTGGTACCTTCTACAGTTTGAGGACTTGATGgtatcatctatttcttgatttttctgacataatcatagttacctttaggttattgtggagcttgattcctttaaactttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT