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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGTACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaaaatgaaaaaaaaaaaagtttctatttttatttgcttcagtcattgtgtagtatgtgaacgtgacctttgttttgttatggttggaactgtgcag

Basic information

species Glycine max
transcript GLYMA16G04950.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4314110|gb|AI461229.1|AI461229
EST:     ACATAAAGATGGGTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCANAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|192324897|gb|FK015378.1|FK015378
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|24136885|gb|BU927395.1|BU927395
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|19053688|gb|BM732355.1|BM732355
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|14126334|gb|BG790772.1|BG790772
EST:     ACATAAAGATGGTTCCTGGAGATTCAGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|19269784|gb|BM886040.1|BM886040
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|16346473|gb|BI972077.1|BI972077
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|11412008|gb|BF424019.1|BF424019
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|208182833|gb|GD986935.1|GD986935
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGACGGAG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACG-CGGAG
EST: gi|208314168|gb|GE117760.1|GE117760
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTT
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTT
EST: gi|7691975|gb|AW760091.1|AW760091
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTNTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|208104867|gb|GD903220.1|GD903220
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTACTAT                         TTATCTTCCCCAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|16996918|gb|BM086290.1|BM086290
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|10239027|gb|BE807915.1|BE807915
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|19052636|gb|BM731303.1|BM731303
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|12773290|gb|BG238217.1|BG238217
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|207710962|gb|GD693480.1|GD693480
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|15813096|gb|BI785371.1|BI785371
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|6566722|gb|AW234354.1|AW234354
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|192327271|gb|FK019548.1|FK019548
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|6726859|gb|AW311278.1|AW311278
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|16996796|gb|BM086178.1|BM086178
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|208326536|gb|GE120246.1|GE120246
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|17022538|gb|BM093572.1|BM093572
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|208079997|gb|GD874183.1|GD874183
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|15337235|gb|BI497891.1|BI497891
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|14258870|gb|BG881778.1|BG881778
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATACACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|21678471|gb|BQ630822.1|BQ630822
EST:     ACATAAATATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|5770394|gb|AI973568.1|AI973568
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGA
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|208069825|gb|GD870460.1|GD870460
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|18732892|gb|BM527308.1|BM527308
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|9258985|gb|BE347132.1|BE347132
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|9259378|gb|BE347525.1|BE347525
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
EST: gi|16105996|gb|BI893736.1|BI893736
EST:     ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTAT                         TTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG
genomic: ACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaa ... aactgtgcagTTATCTTCCCAAAACGCGGAGCATGATGAGATAGACTTTGAGTTCTTGGGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TACTGGCTTCCAGTCCAAAGGGTCTTACTTGTTTGGTCACTTCAGCATGTACATAAAGATGGTTCCTGGAGATTCTGCTGGCACAGTCACTGCTTTCTATgtatgcacaaaatgaaaaaaaaaaaagtttctatttttatttgcttcagtcattgtgtagtatgtgaacgtgacctttgttttgttatggttggaactgtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT