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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGTAGTGACTTGTTGAAGACTTGGTTGCTGGCCACGGCAACTGTAGTTTTGGTCATGGTTGGATCTGCCTACACTGGGCCAGCCATGAATCCTGCCAACgtgagtgattagctttttttagcatttgccattttgttttttcgtgcatgaattgtatgcgtttcttgcatttatcttttgcattgccactagggtgatt...

Basic information

species Glycine max
transcript GLYMA16G04800.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G04800.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ16948 (Selaginella moellendorffii), 5'ss of exon 2
TCGTAGTGACTTGTTGAAGACTTGGTTGCTGGCCACGGCAACTGTAGTTTTGGTCATGGTTGGATCTGCCTACACTGGGCCAGCCATGAATCCTGCCAACgtgagtgattagctttttttagcatttgccattttgttttttcgtgcatgaattgtatgcgtttcttgcatttatcttttgcattgccactagggtgatt
  | |  |      | ||| |  || |  |   | |  | ||  | |   |  || || | || || |  |||||||| |||||||||||||||||||| || |||    |         || ||   || |||| |  |     |  ||| || | ||  |||||| ||                              
CAGGAACGCTGCTCTCAAGTCAGGGATCATCATCTCCACCACCATCGCGCTCATCGTGCTGGGCTCGGGATACACTGGCCCAGCCATGAATCCTGCCAATgtaagtcgaga---------agaatcctcctttttctcctcctcggtttgatttctttg-atttcttccag-----------------------------

upper sequence: GLYMA16G04800.1 (Glycine max), 5'ss of exon 2
lower sequence: EFJ16069 (Selaginella moellendorffii), 5'ss of exon 2
TCGTAGTGACTTGTTGAAGACTTGGTTGCTGGCCACGGCAACTGTAGTTTTGGTCATGGTTGGATCTGCCTACACTGGGCCAGCCATGAATCCTGCCAACgtgagtgattagctttttttagcatttgccattttgttttttcgtgcatgaattgtatgcgtttcttgcatttatcttttgcattgccactagggtgatt
  | |  |      | ||| |  || |  |   | |  | ||  | |   |  || || | || || |  |||||||| |||||||||||||||||||| || |||    |    |  |     |   ||   | |  ||    ||  ||  |||| ||  || ||| ||                              
CAGGAACGCTGCTCTCAAGTCAGGGATCATCATCTCCACCACCATCGCGCTCATCGTGCTGGGCTCGGGATACACTGGCCCAGCCATGAATCCTGCCAATgtaagtcgagaaaaatcctccttttcctcctcctcggcttgatttgtttggtttgtttg-attccttccag-----------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193632303|gb|FK581887.1|FK581887
EST:     CTATTGGTTTGGTATCTGCCTACACTGGGCCAGCCATGAATCCTGCCAAC                         GCTTTTGGCTGGGCATACATAAACAACTGGCACAACACATGGGACCAATTC
genomic: C-A-TGG-TTGG-ATCTGCCTACACTGGGCCAGCCATGAATCCTGCCAACgtgagtgatt ... gtccctgcagGCTTTTGGCTGGGCATACATAAACAACTGGCACAACACATGGGACCAATTC
EST: gi|57574578|gb|CX547553.1|CX547553
EST:     TGGTCATGGTTGGATCTGCCTACACTGGGCCAGCCATGAATCCTGCCAAC                         GCTTTTGGCTGGGCATACATAAACAACTGGCACAACACATGGGACCAATTC
genomic: TGGTCATGGTTGGATCTGCCTACACTGGGCCAGCCATGAATCCTGCCAACgtgagtgatt ... gtccctgcagGCTTTTGGCTGGGCATACATAAACAACTGGCACAACACATGGGACCAATTC
EST: gi|193491877|gb|FK457801.1|FK457801
EST:     GGTACATGGTTGGATCTGCCTACACTGGGCCAGCCATGAATCCTGCCAAC                         GCTTTTGGCTGGGCATACATAAACAACTGGCACAACACATGGGACCAATTC
genomic: GGT-CATGGTTGGATCTGCCTACACTGGGCCAGCCATGAATCCTGCCAACgtgagtgatt ... gtccctgcagGCTTTTGGCTGGGCATACATAAACAACTGGCACAACACATGGGACCAATTC
EST: gi|207768259|gb|GD739943.1|GD739943
EST:     TGGTCATGGTTGGATCTGCCTACACTGGGCCAGCCATGAATCCTGCCAAC                         GCTTTTGGCTGGGCATACATAAACAACTGGCACAACACATGGGACCAATTC
genomic: TGGTCATGGTTGGATCTGCCTACACTGGGCCAGCCATGAATCCTGCCAACgtgagtgatt ... gtccctgcagGCTTTTGGCTGGGCATACATAAACAACTGGCACAACACATGGGACCAATTC
EST: gi|193713309|gb|FK651900.1|FK651900
EST:     TGGTCATGGTTGGATCTGCCTACACTGGGCCAGCCATGAATCCTGCCAAC                         GCTTTTGGCTGGGCATACATAAACAACTGGCACAACACATGGGACCAATTC
genomic: TGGTCATGGTTGGATCTGCCTACACTGGGCCAGCCATGAATCCTGCCAACgtgagtgatt ... gtccctgcagGCTTTTGGCTGGGCATACATAAACAACTGGCACAACACATGGGACCAATTC
EST: gi|193563519|gb|FK519966.1|FK519966
EST:     TATTGGTTTGGTATTCTGCCTACACTGGGCCAGCCATGAATCCTGCCAAC                         GCTTTTGGCTGGGCATACATAAACAACTGGCACAACACATGGGACCAATTC
genomic: -A-TGG-TTGG-A-TCTGCCTACACTGGGCCAGCCATGAATCCTGCCAACgtgagtgatt ... gtccctgcagGCTTTTGGCTGGGCATACATAAACAACTGGCACAACACATGGGACCAATTC
EST: gi|19348017|gb|BM892549.1|BM892549
EST:     TGGTCATGGTTGGATCTGCCTACACTGGGCCAGCCATGAATCCTGCCAAC                         GCTTTTGGCTGGGCATACATAAACAACTGGCACAACACATGGGACCAATTC
genomic: TGGTCATGGTTGGATCTGCCTACACTGGGCCAGCCATGAATCCTGCCAACgtgagtgatt ... gtccctgcagGCTTTTGGCTGGGCATACATAAACAACTGGCACAACACATGGGACCAATTC
EST: gi|58019771|gb|CX706513.1|CX706513
EST:     TGGTCATGGTTGGATCTGCCTACACTGGGCCAGCCATGAATCCTGCCAAC                         GCTTTTGGCTGGGCATACATAAACAACTGGCACAACACATGGGACCAATTC
genomic: TGGTCATGGTTGGATCTGCCTACACTGGGCCAGCCATGAATCCTGCCAACgtgagtgatt ... gtccctgcagGCTTTTGGCTGGGCATACATAAACAACTGGCACAACACATGGGACCAATTC
EST: gi|208207664|gb|GE007585.1|GE007585
EST:     TGGTCATGGTTGGATCTGCCTACACGGGGCCAGCCATGAATCCTGCCAAC                         GCTTTTGGCTGGGCATACATAAACAACTGGCACAACACATGGGACCAATTC
genomic: TGGTCATGGTTGGATCTGCCTACACTGGGCCAGCCATGAATCCTGCCAACgtgagtgatt ... gtccctgcagGCTTTTGGCTGGGCATACATAAACAACTGGCACAACACATGGGACCAATTC